RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 IZUMO1Q8IYV9 350 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 MORC4Q8TE76 937 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 SOCS4Q8WXH5 440 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 LARP4BQ92615 738 aaKnown RBP3.99□□□□□ -1.77
HMGB1-201ENST00000326004 CAVIN3Q969G5 261 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 RSPRY1Q96DX4 576 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 ZDHHC12Q96GR4 267 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 CRB3Q9BUF7 120 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 KRTAP4-7Q9BYR0 210 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 INO80BQ9C086 356 aaPredicted RBP3.99□□□□□ -1.77
HMGB1-201ENST00000326004 GBA2Q9HCG7 927 aaPredicted RBP3.99□□□□□ -1.77
HMGB1-201ENST00000326004 RGL1Q9NZL6 768 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 DNAJB11Q9UBS4 358 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 CDC23Q9UJX2 597 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 MAGED2Q9UNF1 606 aaPredicted RBP3.99□□□□□ -1.77
HMGB1-201ENST00000326004 HPSEQ9Y251 543 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 SNX14Q9Y5W7 946 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 A0A087WV62 115 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 FAM234BA2RU67 622 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 GRID2IPA4D2P6 1211 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 ZAR1LA6NP61 321 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 IFRD1O00458 451 aaPredicted RBP3.98□□□□□ -1.77
HMGB1-201ENST00000326004 PODXLO00592 558 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 FFAR2O15552 330 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 COQ9O75208 318 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 NDST3O95803 873 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 RHOP08100 348 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 CHRM2P08172 466 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 C6P13671 934 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 EGR1P18146 543 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 SLC5A2P31639 672 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 UQCRC1P31930 480 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 ATICP31939 592 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 MPLP40238 635 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 ALDH9A1P49189 494 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 MTHFSP49914 203 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 PGDP52209 483 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 SEC24CP53992 1094 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 MRPS35P82673 323 aaKnown RBP3.98□□□□□ -1.77
HMGB1-201ENST00000326004 ICA1Q05084 483 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 TBCCQ15814 346 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 TXNRD1Q16881 649 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 SLC5A9Q2M3M2 681 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.98□□□□□ -1.77
HMGB1-201ENST00000326004 PLAC9Q5JTB6 97 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 FAXCQ5TGI0 409 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 KAZNQ674X7 775 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 IGFL4Q6B9Z1 124 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 MAVSQ7Z434 540 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 RAB11FIP4Q86YS3 637 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 SLC44A3Q8N4M1 653 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 AMER2Q8N7J2 671 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 ZNF527Q8NB42 609 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 GLIS1Q8NBF1 620 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 VPS37AQ8NEZ2 397 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 TMEM171Q8WVE6 324 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 POF1BQ8WVV4 589 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 GLG1Q92896 1179 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 ARPC5LQ9BPX5 153 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 C17orf80Q9BSJ5 609 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.98□□□□□ -1.77
HMGB1-201ENST00000326004 SLC25A32Q9H2D1 315 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 TMEM8AQ9HCN3 771 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 TRIM36Q9NQ86 728 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 TMOD4Q9NZQ9 345 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 LRIT1Q9P2V4 623 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 SLC39A10Q9ULF5 831 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 CA14Q9ULX7 337 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 USP22Q9UPT9 525 aa3.98□□□□□ -1.77
HMGB1-201ENST00000326004 A1L4Q6 167 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 PSMD9O00233 223 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 CCNT2O60583 730 aaKnown RBP3.97□□□□□ -1.77
HMGB1-201ENST00000326004 SNX2O60749 519 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 SKAP2O75563 359 aaPredicted RBP3.97□□□□□ -1.77
HMGB1-201ENST00000326004 URI1O94763 535 aaPredicted RBP3.97□□□□□ -1.77
HMGB1-201ENST00000326004 PRKCBP05771 671 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 ZFXP17010 805 aaPredicted RBP3.97□□□□□ -1.77
HMGB1-201ENST00000326004 MST1P26927 711 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 LIPAP38571 399 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 GATMP50440 423 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 TIRAPP58753 221 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 SP2Q02086 613 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 EIF2B5Q13144 721 aaKnown RBP3.97□□□□□ -1.77
HMGB1-201ENST00000326004 KCNAB1Q14722 419 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 CLCA4Q14CN2 919 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 RAB30Q15771 203 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 MAPKAPK3Q16644 382 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 GRAMD1BQ3KR37 738 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 TREML2Q5T2D2 321 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 HECTD2Q5U5R9 776 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 SLC9A4Q6AI14 798 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 ZNF551Q7Z340 670 aaPredicted RBP3.97□□□□□ -1.77
HMGB1-201ENST00000326004 SKAP1Q86WV1 359 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 VRK3Q8IV63 474 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 CCDC28AQ8IWP9 274 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 Q8N1X5 172 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 ACTRT2Q8TDY3 377 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 NEU4Q8WWR8 484 aaPredicted RBP3.97□□□□□ -1.77
HMGB1-201ENST00000326004 TFAP2BQ92481 460 aa3.97□□□□□ -1.77
HMGB1-201ENST00000326004 RFKQ969G6 155 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms