RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 TWF1Q12792 350 aa9.03□□□□□ -0.96
USF3-201ENST00000316407 NEK5Q6P3R8 708 aa9.03□□□□□ -0.96
USF3-201ENST00000316407 PI4K2AQ9BTU6 479 aa9.03□□□□□ -0.96
USF3-201ENST00000316407 PIH1D3Q9NQM4 214 aaKnown RBP9.03□□□□□ -0.96
USF3-201ENST00000316407 PBRM1Q86U86 1689 aa9.03□□□□□ -0.96
USF3-201ENST00000316407 CLOCKO15516 846 aa9.03□□□□□ -0.96
USF3-201ENST00000316407 CDC16Q13042 620 aa9.03□□□□□ -0.96
USF3-201ENST00000316407 MADCAM1Q13477 382 aa9.03□□□□□ -0.96
USF3-201ENST00000316407 EFCAB3Q8N7B9 438 aa9.03□□□□□ -0.96
USF3-201ENST00000316407 SUN5Q8TC36 379 aa9.03□□□□□ -0.96
USF3-201ENST00000316407 STAP1Q9ULZ2 295 aa9.03□□□□□ -0.96
USF3-201ENST00000316407 FAM92AA1XBS5 289 aa9.03□□□□□ -0.96
USF3-201ENST00000316407 FAM25EA8MYX2 175 aa9.03□□□□□ -0.96
USF3-201ENST00000316407 PTGS2P35354 604 aa9.03□□□□□ -0.96
USF3-201ENST00000316407 EXOSC10Q01780 885 aaKnown RBP9.03□□□□□ -0.96
USF3-201ENST00000316407 DPYDQ12882 1025 aa9.03□□□□□ -0.96
USF3-201ENST00000316407 DNAJC14Q6Y2X3 702 aaPredicted RBP9.03□□□□□ -0.96
USF3-201ENST00000316407 SIPA1Q96FS4 1042 aa9.03□□□□□ -0.96
USF3-201ENST00000316407 PLEKHF1Q96S99 279 aa9.03□□□□□ -0.96
USF3-201ENST00000316407 ZNF554Q86TJ5 538 aa9.03□□□□□ -0.96
USF3-201ENST00000316407 SLC44A5Q8NCS7 719 aa9.03□□□□□ -0.96
USF3-201ENST00000316407 OR7A2PQ8NGA2 310 aa9.03□□□□□ -0.96
USF3-201ENST00000316407 PRELID1Q9Y255 219 aa9.03□□□□□ -0.96
USF3-201ENST00000316407 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.03□□□□□ -0.96
USF3-201ENST00000316407 PFKFB3Q16875 520 aaPredicted RBP9.03□□□□□ -0.96
USF3-201ENST00000316407 ZNF333Q96JL9 665 aa9.03□□□□□ -0.96
USF3-201ENST00000316407 COILP38432 576 aaPredicted RBP9.02□□□□□ -0.96
USF3-201ENST00000316407 LIFRP42702 1097 aa9.02□□□□□ -0.96
USF3-201ENST00000316407 TAB1Q15750 504 aa9.02□□□□□ -0.96
USF3-201ENST00000316407 MTHFD1LQ6UB35 978 aa9.02□□□□□ -0.96
USF3-201ENST00000316407 CATSPER4Q7RTX7 472 aa9.02□□□□□ -0.96
USF3-201ENST00000316407 COL23A1Q86Y22 540 aaPredicted RBP9.02□□□□□ -0.96
USF3-201ENST00000316407 KYQ8NBH2 561 aa9.02□□□□□ -0.96
USF3-201ENST00000316407 GIMAP8Q8ND71 665 aaPredicted RBP9.02□□□□□ -0.96
USF3-201ENST00000316407 ZNF341Q9BYN7 854 aa9.02□□□□□ -0.96
USF3-201ENST00000316407 CDC42EP4Q9H3Q1 356 aaKnown RBP9.02□□□□□ -0.96
USF3-201ENST00000316407 DGKBQ9Y6T7 804 aa9.02□□□□□ -0.96
USF3-201ENST00000316407 NPM3O75607 178 aaKnown RBP9.02□□□□□ -0.96
USF3-201ENST00000316407 KCNJ6P48051 423 aa9.02□□□□□ -0.96
USF3-201ENST00000316407 MMGT1Q8N4V1 131 aa9.02□□□□□ -0.96
USF3-201ENST00000316407 DCUN1D1Q96GG9 259 aa9.02□□□□□ -0.96
USF3-201ENST00000316407 MTG1Q9BT17 334 aaPredicted RBP9.02□□□□□ -0.96
USF3-201ENST00000316407 ROPN1BQ9BZX4 212 aaPredicted RBP9.02□□□□□ -0.96
USF3-201ENST00000316407 ROPN1Q9HAT0 212 aaPredicted RBP9.02□□□□□ -0.96
USF3-201ENST00000316407 hCG_1984214I3L0E3 225 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 MTRF1O75570 445 aaKnown RBP9.02□□□□□ -0.97
USF3-201ENST00000316407 BCAP31P51572 246 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 CEBPGP53567 150 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 ZNF713Q8N859 430 aaPredicted RBP9.02□□□□□ -0.97
USF3-201ENST00000316407 UNC13AQ9UPW8 1703 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 CENPXA8MT69 81 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 SPTLC1O15269 473 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 RRM2P31350 389 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 SERPINB9P50453 376 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 TSNQ15631 228 aaKnown RBP9.02□□□□□ -0.97
USF3-201ENST00000316407 GRID1Q9ULK0 1009 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 TTLL13PA6NNM8 815 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 EEF2KO00418 725 aaKnown RBP9.02□□□□□ -0.97
USF3-201ENST00000316407 ZMPSTE24O75844 475 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 KLRC1P26715 233 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 NMT1P30419 496 aaKnown RBP9.02□□□□□ -0.97
USF3-201ENST00000316407 SETD3Q86TU7 594 aaPredicted RBP9.02□□□□□ -0.97
USF3-201ENST00000316407 RPS6KL1Q9Y6S9 549 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 STX5Q13190 355 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 WDR72Q3MJ13 1102 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 EFR3BQ9Y2G0 817 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 ENTPD5O75356 428 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 ADAM17P78536 824 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 KCTD2Q14681 263 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 PPP1R14AQ96A00 147 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 EIF2AK1Q9BQI3 630 aaKnown RBP9.02□□□□□ -0.97
USF3-201ENST00000316407 FBXO40Q9UH90 709 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 ZC2HC1CQ53FD0 456 aaPredicted RBP9.02□□□□□ -0.97
USF3-201ENST00000316407 PYDC2Q56P42 97 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 GJB7Q6PEY0 223 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 TRIM72Q6ZMU5 477 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 PAFAH2Q99487 392 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 NUDT5Q9UKK9 219 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 URB1O60287 2271 aaKnown RBP9.02□□□□□ -0.97
USF3-201ENST00000316407 CCT8P50990 548 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 JAK3P52333 1124 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 CACNB3P54284 484 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 ROR2Q01974 943 aaKnown RBP9.02□□□□□ -0.97
USF3-201ENST00000316407 TNFAIP1Q13829 316 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 NFYCQ13952 458 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 LDLRAP1Q5SW96 308 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 SLC25A24Q6NUK1 477 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 PNMA3Q9UL41 463 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 C3orf70A6NLC5 250 aaPredicted RBP9.02□□□□□ -0.97
USF3-201ENST00000316407 PDE9AO76083 593 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 NOS3P29474 1203 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 RGS2P41220 211 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 SLC1A1P43005 524 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 IFI35P80217 286 aaPredicted RBP9.02□□□□□ -0.97
USF3-201ENST00000316407 BMPR2Q13873 1038 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 PREPLQ4J6C6 727 aaPredicted RBP9.02□□□□□ -0.97
USF3-201ENST00000316407 KAT2BQ92831 832 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 PDCD10Q9BUL8 212 aa9.02□□□□□ -0.97
USF3-201ENST00000316407 HBS1LQ9Y450 684 aaKnown RBP9.02□□□□□ -0.97
USF3-201ENST00000316407 PTPRTO14522 1441 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms