RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 APOL1O14791 398 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 KCNN4O15554 427 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 AARS2Q5JTZ9 985 aaKnown RBP8.5□□□□□ -1.05
VPS41-202ENST00000310301 ITPRIPL1Q6GPH6 555 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 DCP1BQ8IZD4 617 aaKnown RBP8.5□□□□□ -1.05
VPS41-202ENST00000310301 OR6P1Q8NGX9 317 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 MKL1Q969V6 931 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 E2F7Q96AV8 911 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 EPB41L4AQ9HCS5 686 aaPredicted RBP8.5□□□□□ -1.05
VPS41-202ENST00000310301 HEY2Q9UBP5 337 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 E2F8A0AVK6 867 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 RNF103O00237 685 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 AP1G2O75843 785 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 FKBP9O95302 570 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 MYL2P10916 166 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 CCL5P13501 91 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 MAGEA4P43358 317 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 NUDT2P50583 147 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 CDH6P55285 790 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 KCTD21Q4G0X4 260 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 EFCAB12Q6NXP0 572 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 FKBP9P1Q75LS8 142 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 TMC7Q7Z402 723 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 RIN3Q8TB24 985 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 BTN2A2Q8WVV5 523 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 C17orf80Q9BSJ5 609 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 TRIM62Q9BVG3 475 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 SHCBP1LQ9BZQ2 653 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 ZCWPW1Q9H0M4 648 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 PXMP2Q9NR77 195 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 POLE3Q9NRF9 147 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 ZC3H7BQ9UGR2 993 aaKnown RBP8.5□□□□□ -1.05
VPS41-202ENST00000310301 FZD1Q9UP38 647 aa8.5□□□□□ -1.05
VPS41-202ENST00000310301 CCDC78A2IDD5 438 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 PRRG1O14668 218 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 CD4P01730 458 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 KRT16P08779 473 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 WEE2P0C1S8 567 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 H2AFXP16104 143 aaPredicted RBP8.49□□□□□ -1.05
VPS41-202ENST00000310301 SLC1A1P43005 524 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 ACTR2P61160 394 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 PCNX4Q63HM2 1172 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 ARHGAP17Q68EM7 881 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.49□□□□□ -1.05
VPS41-202ENST00000310301 PRUNE1Q86TP1 453 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 SCUBE1Q8IWY4 988 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 MMTAG2Q9BU76 263 aaKnown RBP8.49□□□□□ -1.05
VPS41-202ENST00000310301 PARVBQ9HBI1 364 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 ANKEF1Q9NU02 776 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 C6orf203Q9P0P8 240 aaPredicted RBP8.49□□□□□ -1.05
VPS41-202ENST00000310301 FAM32AQ9Y421 112 aaKnown RBP8.49□□□□□ -1.05
VPS41-202ENST00000310301 COL22A1Q8NFW1 1626 aaPredicted RBP8.49□□□□□ -1.05
VPS41-202ENST00000310301 TOPAZ1Q8N9V7 1692 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 DUSP11O75319 330 aaKnown RBP8.49□□□□□ -1.05
VPS41-202ENST00000310301 LRG1P02750 347 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 PRKCBP05771 671 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 SOX6P35712 828 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 NNMTP40261 264 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 SERPINB8P50452 374 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 SERPINB9P50453 376 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 DCAF4L1Q3SXM0 396 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 AASDHQ4L235 1098 aaPredicted RBP8.49□□□□□ -1.05
VPS41-202ENST00000310301 TTC39BQ5VTQ0 682 aaPredicted RBP8.49□□□□□ -1.05
VPS41-202ENST00000310301 TRIM69Q86WT6 500 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 RCOR2Q8IZ40 523 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 GUF1Q8N442 669 aaKnown RBP8.49□□□□□ -1.05
VPS41-202ENST00000310301 USP38Q8NB14 1042 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 SYTL5Q8TDW5 730 aaPredicted RBP8.49□□□□□ -1.05
VPS41-202ENST00000310301 ZNF296Q8WUU4 475 aaPredicted RBP8.49□□□□□ -1.05
VPS41-202ENST00000310301 PDCD2LQ9BRP1 358 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 DHX35Q9H5Z1 703 aaKnown RBP8.49□□□□□ -1.05
VPS41-202ENST00000310301 TASP1Q9H6P5 420 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 PPCSQ9HAB8 311 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 MPP6Q9NZW5 540 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 H3BQF6 201 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 ZNF263O14978 683 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 ASNA1O43681 348 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 SFSWAPQ12872 951 aaKnown RBP8.49□□□□□ -1.05
VPS41-202ENST00000310301 C16orf72Q14CZ0 275 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 AAK1Q2M2I8 961 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 RNF219Q5W0B1 726 aaPredicted RBP8.49□□□□□ -1.05
VPS41-202ENST00000310301 MFN1Q8IWA4 741 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 OR8H2Q8N162 312 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 RIBC1Q8N443 379 aaPredicted RBP8.49□□□□□ -1.05
VPS41-202ENST00000310301 CASKIN2Q8WXE0 1202 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 BRI3BPQ8WY22 251 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 BTBD7Q9P203 1132 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 SNCAIPQ9Y6H5 919 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 POTECB2RU33 542 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 AP3B1O00203 1094 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 ZBTB39O15060 712 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 CYTH3O43739 400 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 SMNDC1O75940 238 aaKnown RBP eCLIP8.49□□□□□ -1.05
VPS41-202ENST00000310301 TBXAS1P24557 533 aaPredicted RBP8.49□□□□□ -1.05
VPS41-202ENST00000310301 YWHABP31946 246 aaKnown RBP8.49□□□□□ -1.05
VPS41-202ENST00000310301 ITGA8P53708 1063 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 FBXW4P57775 412 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 CREMQ03060 361 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 PRKCZQ05513 592 aa8.49□□□□□ -1.05
VPS41-202ENST00000310301 MAPRE1Q15691 268 aaKnown RBP8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms