RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 PCGF5Q86SE9 256 aa19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 FUKQ8N0W3 1084 aa19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 ZMAT2Q96NC0 199 aaKnown RBP19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 VTA1Q9NP79 307 aa19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 XPO7Q9UIA9 1087 aaKnown RBP19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 HCRTO43612 131 aa19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 UBOX5O94941 541 aa19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 SMPD1P17405 629 aa19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 TAC1P20366 129 aa19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 DARS2Q6PI48 645 aaKnown RBP19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 LCLAT1Q6UWP7 414 aa19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 SCUBE3Q8IX30 993 aa19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 KATNBL1Q9H079 304 aa19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 RABGEF1Q9UJ41 708 aa19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 PNMA3Q9UL41 463 aa19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 GRID1Q9ULK0 1009 aa19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 C2CD2Q9Y426 696 aa19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 SCN1AP35498 2009 aa19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 CITO14578 2027 aa19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 SUN1O94901 812 aa19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 MNAT1P51948 309 aa19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 CCNA1P78396 465 aa19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 ZC3H12AQ5D1E8 599 aaKnown RBP19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 USP50Q70EL3 339 aaPredicted RBP19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 FAXDC2Q96IV6 333 aa19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 SMC6Q96SB8 1091 aa19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 CNPY3Q9BT09 278 aa19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 CDHR5Q9HBB8 845 aa19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 NGRNQ9NPE2 291 aaKnown RBP19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 UBN1Q9NPG3 1134 aa19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 SLC12A4Q9UP95 1085 aa19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 NME7Q9Y5B8 376 aa19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 PLXNA1Q9UIW2 1896 aa19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 PRPSAP2O60256 369 aa19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 IL9RQ01113 521 aa19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 DNAJC3Q13217 504 aa19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 DPYSL3Q14195 570 aa19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 CYB5D1Q6P9G0 228 aa19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 DPP9Q86TI2 863 aa19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 TDRPQ86YL5 185 aa19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 FBF1Q8TES7 1133 aa19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 C18orf25Q96B23 403 aaPredicted RBP19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 EIF2AQ9BY44 585 aaKnown RBP19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 B3GNT5Q9BYG0 378 aa19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 RSAD1Q9HA92 442 aa19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 TUBGCP4Q9UGJ1 667 aa19.19■□□□□ 0.66
SHKBP1-201ENST00000291842 ASMTLO95671 621 aa19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 CA4P22748 312 aa19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 PCK1P35558 622 aa19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 CCDC14Q49A88 953 aa19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 LDLRAD1Q5T700 205 aa19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 DPY19L2Q6NUT2 758 aa19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 TTC30AQ86WT1 665 aa19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 RMDN2Q96LZ7 410 aa19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 PITPNM3Q9BZ71 974 aa19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 MIS12Q9H081 205 aa19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 CHMP2BQ9UQN3 213 aa19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 DNAH12Q6ZR08 3092 aa19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 LOC102724159A0A0B4J2E5 919 aa19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 BTBD19C9JJ37 291 aa19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 H7C0C1 242 aa19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 ADCY6O43306 1168 aa19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 ATP5OP48047 213 aa19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 GEMIN4P57678 1058 aaKnown RBP19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 ROR1Q01973 937 aa19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 KRT81Q14533 505 aa19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 ACAP1Q15027 740 aa19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 PWP2Q15269 919 aaKnown RBP19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 IGDCC3Q8IVU1 814 aa19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 PALM2Q8IXS6 379 aa19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 SGSM3Q96HU1 749 aa19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 APOL6Q9BWW8 343 aa19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 GBA2Q9HCG7 927 aaPredicted RBP19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 PSMC3IPQ9P2W1 217 aaPredicted RBP19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 HEY1Q9Y5J3 304 aa19.18■□□□□ 0.66
SHKBP1-201ENST00000291842 AVILO75366 819 aa19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 DNAJC8O75937 253 aaPredicted RBP19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 KRT4P19013 534 aa19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 HOXA11P31270 313 aaPredicted RBP19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 GCLCP48506 637 aaPredicted RBP19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 NR1H3Q13133 447 aa19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 XRCC4Q13426 336 aa19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 SLC1A5Q15758 541 aa19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 ATP11CQ8NB49 1132 aa19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 TRAF3IP1Q8TDR0 691 aaPredicted RBP19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 DENND1AQ8TEH3 1009 aa19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 KLF6Q99612 283 aaPredicted RBP19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 FRMD8P1Q9BZ68 369 aaPredicted RBP19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 CD248Q9HCU0 757 aa19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 SLCO1B3Q9NPD5 702 aa19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 ZSWIM8A7E2V4 1837 aa19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 KAT6AQ92794 2004 aa19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 GOLGA8RI6L899 631 aa19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 COL1A2P08123 1366 aa19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 MMP3P08254 477 aa19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 TFE3P19532 575 aaPredicted RBP19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 GRM5P41594 1212 aa19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 YARSP54577 528 aaKnown RBP19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 CA9Q16790 459 aa19.17■□□□□ 0.66
SHKBP1-201ENST00000291842 ICE2Q659A1 982 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms