RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 COL4A6Q14031 1691 aa14.81□□□□□ -0.04
SS18-201ENST00000269137 OR6C75A6NL08 312 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 KRIT1O00522 736 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 FBXO21O94952 628 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 TUBBP07437 444 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 SSR1P43307 286 aaKnown RBP14.8□□□□□ -0.04
SS18-201ENST00000269137 WDR5P61964 334 aaKnown RBP14.8□□□□□ -0.04
SS18-201ENST00000269137 ADCY1Q08828 1119 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 ADIGQ0VDE8 80 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 RAB41Q5JT25 222 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 SLC13A5Q86YT5 568 aaPredicted RBP14.8□□□□□ -0.04
SS18-201ENST00000269137 NCAPGQ9BPX3 1015 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 CWH43Q9H720 699 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 ANKZF1Q9H8Y5 726 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 RC3H2Q9HBD1 1191 aaKnown RBP14.8□□□□□ -0.04
SS18-201ENST00000269137 PNPLA8Q9NP80 782 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 IL23AQ9NPF7 189 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 TMEM30AQ9NV96 361 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 NLRC5Q86WI3 1866 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 TARSL2A2RTX5 802 aaKnown RBP14.8□□□□□ -0.04
SS18-201ENST00000269137 HHLA1C9JL84 531 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 RNF8O76064 485 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 ZRANB2O95218 330 aaKnown RBP eCLIP14.8□□□□□ -0.04
SS18-201ENST00000269137 EFEMP2O95967 443 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 GLI1P08151 1106 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 KRT7P08729 469 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 TCF4P15884 667 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 ALDH7A1P49419 539 aaKnown RBP14.8□□□□□ -0.04
SS18-201ENST00000269137 CACNA2D1P54289 1103 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 MRPS5P82675 430 aaKnown RBP14.8□□□□□ -0.04
SS18-201ENST00000269137 SLC25A11Q02978 314 aaKnown RBP14.8□□□□□ -0.04
SS18-201ENST00000269137 PPP2R5EQ16537 467 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 NFE2Q16621 373 aaPredicted RBP14.8□□□□□ -0.04
SS18-201ENST00000269137 HADHQ16836 314 aaKnown RBP14.8□□□□□ -0.04
SS18-201ENST00000269137 GLE1Q53GS7 698 aaKnown RBP14.8□□□□□ -0.04
SS18-201ENST00000269137 CCDC70Q6NSX1 233 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 AADACL2Q6P093 401 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 RCOR2Q8IZ40 523 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 SIX6OS1Q8N1H7 587 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 KCNK16Q96T55 309 aa14.8□□□□□ -0.04
SS18-201ENST00000269137 OXCT2Q9BYC2 517 aaPredicted RBP14.8□□□□□ -0.04
SS18-201ENST00000269137 DMAP1Q9NPF5 467 aaPredicted RBP14.8□□□□□ -0.04
SS18-201ENST00000269137 DDX56Q9NY93 547 aaKnown RBP14.8□□□□□ -0.04
SS18-201ENST00000269137 CARNS1A5YM72 827 aa14.79□□□□□ -0.04
SS18-201ENST00000269137 FSCN2O14926 492 aa14.79□□□□□ -0.04
SS18-201ENST00000269137 SART1O43290 800 aaKnown RBP14.79□□□□□ -0.04
SS18-201ENST00000269137 HSF2BPO75031 334 aa14.79□□□□□ -0.04
SS18-201ENST00000269137 GRAP2O75791 330 aa14.79□□□□□ -0.04
SS18-201ENST00000269137 RHOXF2BP0C7M4 288 aa14.79□□□□□ -0.04
SS18-201ENST00000269137 BDNFP23560 247 aa14.79□□□□□ -0.04
SS18-201ENST00000269137 SDC4P31431 198 aa14.79□□□□□ -0.04
SS18-201ENST00000269137 PTPN9P43378 593 aa14.79□□□□□ -0.04
SS18-201ENST00000269137 TKTL1P51854 596 aa14.79□□□□□ -0.04
SS18-201ENST00000269137 DEFB103AP81534 67 aa14.79□□□□□ -0.04
SS18-201ENST00000269137 CCDC14Q49A88 953 aa14.79□□□□□ -0.04
SS18-201ENST00000269137 ZNF280DQ6N043 979 aa14.79□□□□□ -0.04
SS18-201ENST00000269137 TMEM173Q86WV6 379 aaPredicted RBP14.79□□□□□ -0.04
SS18-201ENST00000269137 SPATA2LQ8IUW3 424 aaPredicted RBP14.79□□□□□ -0.04
SS18-201ENST00000269137 CLEC4CQ8WTT0 213 aa14.79□□□□□ -0.04
SS18-201ENST00000269137 FUBP3Q96I24 572 aaKnown RBP eCLIP14.79□□□□□ -0.04
SS18-201ENST00000269137 RBM41Q96IZ5 413 aaKnown RBP14.79□□□□□ -0.04
SS18-201ENST00000269137 RHOXF2Q9BQY4 288 aa14.79□□□□□ -0.04
SS18-201ENST00000269137 DDX23Q9BUQ8 820 aaKnown RBP14.79□□□□□ -0.04
SS18-201ENST00000269137 AP1M1Q9BXS5 423 aa14.79□□□□□ -0.04
SS18-201ENST00000269137 EPC1Q9H2F5 836 aa14.79□□□□□ -0.04
SS18-201ENST00000269137 CNGB3Q9NQW8 809 aa14.79□□□□□ -0.04
SS18-201ENST00000269137 GOLGA6L10A0A0M3HER8 536 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 NT5C1B-RDH14C9J2C7 533 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 H7C4K7 107 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 TBC1D4O60343 1298 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 DESP17661 470 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 MIPP30301 263 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 CTXN3Q4LDR2 81 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 CMTR2Q8IYT2 770 aaKnown RBP14.78□□□□□ -0.04
SS18-201ENST00000269137 SCML4Q8N228 414 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 BCL7CQ8WUZ0 217 aaPredicted RBP14.78□□□□□ -0.04
SS18-201ENST00000269137 CENPIQ92674 756 aaPredicted RBP14.78□□□□□ -0.04
SS18-201ENST00000269137 TTPALQ9BTX7 342 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 C11orf84Q9BUA3 381 aaPredicted RBP14.78□□□□□ -0.04
SS18-201ENST00000269137 PARD6BQ9BYG5 372 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 RAB21Q9UL25 225 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 ACRP10323 421 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 IL1R2P27930 398 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 PTPN7P35236 360 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 PBX3P40426 434 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 CETN2P41208 172 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 MATKP42679 507 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 NDUFV1P49821 464 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 COPS2P61201 443 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 YWHAZP63104 245 aaKnown RBP14.78□□□□□ -0.04
SS18-201ENST00000269137 PPIGQ13427 754 aaKnown RBP eCLIP14.78□□□□□ -0.042e-6■■■■□ 23.1
SS18-201ENST00000269137 ATP13A4Q4VNC1 1196 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 SLC39A12Q504Y0 691 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 ANKS3Q6ZW76 656 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 CEP57Q86XR8 500 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 RNF168Q8IYW5 571 aaPredicted RBP14.78□□□□□ -0.04
SS18-201ENST00000269137 MAIP1Q8WWC4 291 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 RUBCNQ92622 972 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 IGSF21Q96ID5 467 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 KRT12Q99456 494 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms