RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 FAM110CQ1W6H9 321 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 CCDC38Q502W7 563 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 PQLC3Q8N755 202 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 UHMK1Q8TAS1 419 aaKnown RBP11.68□□□□□ -0.54
MSH3-201ENST00000265081 PIWIL1Q96J94 861 aaKnown RBP11.68□□□□□ -0.54
MSH3-201ENST00000265081 CABS1Q96KC9 395 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 C9orf72Q96LT7 481 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 CCDC77Q9BR77 488 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 ABHD16BQ9H3Z7 469 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 AGAP1Q9UPQ3 857 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 SMG5Q9UPR3 1016 aaKnown RBP11.68□□□□□ -0.54
MSH3-201ENST00000265081 USP3Q9Y6I4 520 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 TAC1P20366 129 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 STIP1P31948 543 aaKnown RBP11.68□□□□□ -0.54
MSH3-201ENST00000265081 CTCFP49711 727 aaPredicted RBP11.68□□□□□ -0.54
MSH3-201ENST00000265081 MTFR1Q15390 333 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 DGKDQ16760 1214 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 RNF43Q68DV7 783 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 ARHGEF18Q6ZSZ5 1173 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 GSTA5Q7RTV2 222 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 CPLX4Q7Z7G2 160 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 UNC45BQ8IWX7 931 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 EMC1Q8N766 993 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 KBTBD7Q8WVZ9 684 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 ACSF2Q96CM8 615 aaPredicted RBP11.68□□□□□ -0.54
MSH3-201ENST00000265081 NSRP1Q9H0G5 558 aaKnown RBP11.68□□□□□ -0.54
MSH3-201ENST00000265081 SLC15A5A6NIM6 579 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 TMEM63AO94886 807 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 BRAFP15056 766 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 PLD5Q8N7P1 536 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 MAGEC3Q8TD91 643 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 DCAKDQ8WVC6 231 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 GRAMD1AQ96CP6 724 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 RNF157Q96PX1 679 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 ZNF670Q9BS34 389 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 GRID1Q9ULK0 1009 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 AKT3Q9Y243 479 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 TEX264Q9Y6I9 313 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 NRCAMQ92823 1304 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 FAM47DPA6NHR8 397 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 E5RJQ4 531 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 IL1BP01584 269 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 KRT19P08727 400 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 SLC6A3Q01959 620 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 HIC1Q14526 733 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 CCDC121Q6ZUS5 278 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 MRPL45Q9BRJ2 306 aaKnown RBP11.67□□□□□ -0.54
MSH3-201ENST00000265081 ADPGKQ9BRR6 497 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 TINF2Q9BSI4 451 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 SYT17Q9BSW7 474 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 FRMD8Q9BZ67 464 aaPredicted RBP11.67□□□□□ -0.54
MSH3-201ENST00000265081 PRDM16Q9HAZ2 1276 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 PTPRDP23468 1912 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 NLRC5Q86WI3 1866 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 HIF1AQ16665 826 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 PPP1R26Q5T8A7 1209 aaPredicted RBP11.67□□□□□ -0.54
MSH3-201ENST00000265081 AGGF1Q8N302 714 aaeCLIP11.67□□□□□ -0.54
MSH3-201ENST00000265081 ANKLE1Q8NAG6 615 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 PLAC1Q9HBJ0 212 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 PSMC3IPQ9P2W1 217 aaPredicted RBP11.67□□□□□ -0.54
MSH3-201ENST00000265081 STARD13Q9Y3M8 1113 aa11.67□□□□□ -0.54
MSH3-201ENST00000265081 USP15Q9Y4E8 981 aaPredicted RBP11.67□□□□□ -0.54
MSH3-201ENST00000265081 GOLGA8SH3BPF8 625 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 FOXN2P32314 431 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 GEMIN4P57678 1058 aaKnown RBP11.66□□□□□ -0.54
MSH3-201ENST00000265081 DPYSL2Q16555 572 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 SMTNL2Q2TAL5 461 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 KCNT1Q5JUK3 1230 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 UBXN11Q5T124 520 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 C9orf57Q5W0N0 161 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 PMF1Q6P1K2 205 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 PNMA8AQ86V59 439 aaPredicted RBP11.66□□□□□ -0.54
MSH3-201ENST00000265081 SESTD1Q86VW0 696 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 ZNF668Q96K58 619 aaPredicted RBP11.66□□□□□ -0.54
MSH3-201ENST00000265081 ZWILCHQ9H900 591 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 HAUS2Q9NVX0 235 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 FRMPD3Q5JV73 1810 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 ZNF638Q14966 1978 aaKnown RBP11.66□□□□□ -0.54
MSH3-201ENST00000265081 TCRBV7S3A2A0A539 114 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 SMIM23A6NLE4 172 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 DARSP14868 501 aaKnown RBP11.66□□□□□ -0.54
MSH3-201ENST00000265081 CD19P15391 556 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 GJC1P36383 396 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 GAD2Q05329 585 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 ORC1Q13415 861 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 RAB6CQ53S08 254 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 SH3PXD2AQ5TCZ1 1133 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 DPY19L2Q6NUT2 758 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 APBB1IPQ7Z5R6 666 aaPredicted RBP11.66□□□□□ -0.54
MSH3-201ENST00000265081 NPLOC4Q8TAT6 608 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 RXFP2Q8WXD0 754 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 NT5C3BQ969T7 300 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 SLC10A4Q96EP9 437 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 PLCD4Q9BRC7 762 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 RAB6CQ9H0N0 254 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 SLC5A4Q9NY91 659 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 Q9Y3F1 56 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 SGK1O00141 431 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 ARL4CP56559 192 aa11.66□□□□□ -0.54
MSH3-201ENST00000265081 SOWAHAQ2M3V2 549 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms