RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 OSBP2Q969R2 916 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 ZNF669Q96BR6 464 aaPredicted RBP11.76□□□□□ -0.53
PTPN4-201ENST00000263708 KCTD14Q9BQ13 255 aaPredicted RBP11.76□□□□□ -0.53
PTPN4-201ENST00000263708 AKAP7Q9P0M2 348 aaPredicted RBP11.76□□□□□ -0.53
PTPN4-201ENST00000263708 VAV3Q9UKW4 847 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 ZNF185O15231 689 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 PRR29P0C7W0 189 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 GRIK3Q13003 919 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 DENND5BQ6ZUT9 1274 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 TRIM51Q9BSJ1 452 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 RHOBTB2Q9BYZ6 727 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 CLPBQ9H078 707 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.76□□□□□ -0.53
PTPN4-201ENST00000263708 IKBIPQ70UQ0 350 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 SETD3Q86TU7 594 aaPredicted RBP11.76□□□□□ -0.53
PTPN4-201ENST00000263708 SH2D3AQ9BRG2 576 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 CHST12Q9NRB3 414 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 IDH3BO43837 385 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 FAM20BO75063 409 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 NPTXRO95502 500 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 S100GP29377 79 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 OTUD4Q01804 1114 aaKnown RBP11.76□□□□□ -0.53
PTPN4-201ENST00000263708 ARID5BQ14865 1188 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 DSG4Q86SJ6 1040 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 ENKURQ8TC29 256 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 IL1RAPL1Q9NZN1 696 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 SAE1Q9UBE0 346 aaPredicted RBP11.76□□□□□ -0.53
PTPN4-201ENST00000263708 RBM7Q9Y580 266 aaKnown RBP11.76□□□□□ -0.53
PTPN4-201ENST00000263708 PAICSP22234 425 aaKnown RBP11.76□□□□□ -0.53
PTPN4-201ENST00000263708 PPP1R18Q6NYC8 613 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 CASP12Q6UXS9 341 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 PACS1Q6VY07 963 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 NECAB2Q7Z6G3 386 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 SEC16BQ96JE7 1060 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 EMILIN2Q9BXX0 1053 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 PRODHO43272 600 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 IL18RAPO95256 599 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 PTPN12Q05209 780 aaKnown RBP11.76□□□□□ -0.53
PTPN4-201ENST00000263708 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.76□□□□□ -0.53
PTPN4-201ENST00000263708 PAK5Q9P286 719 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 MEI4A8MW99 385 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 TIPRLO75663 272 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 SUPT7LO94864 414 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 MYL12AP19105 171 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 CYP2B6P20813 491 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 CYP20A1Q6UW02 462 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 RPTNQ6XPR3 784 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 TMEM47Q9BQJ4 181 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 GRID1Q9ULK0 1009 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 MORC2Q9Y6X9 1032 aaPredicted RBP11.75□□□□□ -0.53
PTPN4-201ENST00000263708 KDM5DQ9BY66 1539 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 KIAA0556O60303 1618 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 PIK3CDO00329 1044 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 HALP42357 657 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 KLF6Q99612 283 aaPredicted RBP11.75□□□□□ -0.53
PTPN4-201ENST00000263708 DUSP12Q9UNI6 340 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 PLA2G4CQ9UP65 541 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 KIF1CO43896 1103 aaKnown RBP11.75□□□□□ -0.53
PTPN4-201ENST00000263708 IL12RB1P42701 662 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 CDC40O60508 579 aaKnown RBP eCLIP11.75□□□□□ -0.53
PTPN4-201ENST00000263708 FGFR2P21802 821 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 CPT1AP50416 773 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 IL2P60568 153 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 ZNF671Q8TAW3 534 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 CYP4F12Q9HCS2 524 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 PIH1D3Q9NQM4 214 aaKnown RBP11.75□□□□□ -0.53
PTPN4-201ENST00000263708 ABCA5Q8WWZ7 1642 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 HIST1H2ABP04908 130 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 SNRPAP09012 282 aaKnown RBP11.75□□□□□ -0.53
PTPN4-201ENST00000263708 HIST3H2AQ7L7L0 130 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 FRMD5Q7Z6J6 570 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 HIST1H2ACQ93077 130 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 KLHL28Q9NXS3 571 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 SH3BP4Q9P0V3 963 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 YY1P25490 414 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 TARSP26639 723 aaKnown RBP11.75□□□□□ -0.53
PTPN4-201ENST00000263708 SGCGQ13326 291 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 ATP6AP1LQ52LC2 224 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 TERB1Q8NA31 727 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 CLCC1Q96S66 551 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 SNX13Q9Y5W8 968 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 PHF20L1A8MW92 1017 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 GPD1P21695 349 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 THPOP40225 353 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 IL5RAQ01344 420 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 BIKQ13323 160 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 FAM228AQ86W67 206 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 DLGAP2Q9P1A6 1054 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 H3BN98 237 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 PDE5AO76074 875 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 STILQ15468 1287 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 TCEA2Q15560 299 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 KIAA0408Q6ZU52 694 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 SERPINB12Q96P63 405 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 CIPCQ9C0C6 399 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 TRIM39Q9HCM9 518 aa11.75□□□□□ -0.53
PTPN4-201ENST00000263708 SF3B1O75533 1304 aaKnown RBP eCLIP11.75□□□□□ -0.535e-6■■■■■ 89.4
PTPN4-201ENST00000263708 AGTP01019 485 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 GH1P01241 217 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 VAC14Q08AM6 782 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms