RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 RAD23BP54727 409 aa12.11□□□□□ -0.47
VPS4A-201ENST00000254950 LILRA4P59901 499 aa12.11□□□□□ -0.47
VPS4A-201ENST00000254950 HTRA3P83110 453 aa12.11□□□□□ -0.47
VPS4A-201ENST00000254950 C10orf120Q5SQS8 335 aa12.11□□□□□ -0.47
VPS4A-201ENST00000254950 CPLX4Q7Z7G2 160 aa12.11□□□□□ -0.47
VPS4A-201ENST00000254950 PIGZQ86VD9 579 aa12.11□□□□□ -0.47
VPS4A-201ENST00000254950 WDCPQ9H6R7 721 aa12.11□□□□□ -0.47
VPS4A-201ENST00000254950 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.11□□□□□ -0.47
VPS4A-201ENST00000254950 KAT6AQ92794 2004 aa12.11□□□□□ -0.47
VPS4A-201ENST00000254950 ARL5CA6NH57 179 aa12.11□□□□□ -0.47
VPS4A-201ENST00000254950 SLC2A3P11169 496 aa12.11□□□□□ -0.47
VPS4A-201ENST00000254950 CCL5P13501 91 aa12.11□□□□□ -0.47
VPS4A-201ENST00000254950 KRT10P13645 584 aa12.11□□□□□ -0.47
VPS4A-201ENST00000254950 ASTE1Q2TB18 679 aaPredicted RBP12.11□□□□□ -0.47
VPS4A-201ENST00000254950 SPOCD1Q6ZMY3 1216 aa12.11□□□□□ -0.47
VPS4A-201ENST00000254950 FAM118BQ9BPY3 351 aa12.11□□□□□ -0.47
VPS4A-201ENST00000254950 ADAMTS10Q9H324 1103 aa12.11□□□□□ -0.47
VPS4A-201ENST00000254950 SSX2IPQ9Y2D8 614 aa12.11□□□□□ -0.47
VPS4A-201ENST00000254950 MYH11P35749 1972 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 A0A1W2PQ45 241 aaPredicted RBP12.1□□□□□ -0.47
VPS4A-201ENST00000254950 A0A1W2PQY0 241 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 PABPN1LA6NDY0 278 aaKnown RBP12.1□□□□□ -0.47
VPS4A-201ENST00000254950 ACSL3O95573 720 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 EOMESO95936 686 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 HMBSP08397 361 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 INHBAP08476 426 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 RFC1P35251 1148 aaPredicted RBP12.1□□□□□ -0.47
VPS4A-201ENST00000254950 PPP1R26Q5T8A7 1209 aaPredicted RBP12.1□□□□□ -0.47
VPS4A-201ENST00000254950 CREG2Q8IUH2 290 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 ULBP1Q9BZM6 244 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 UNC93B1Q9H1C4 597 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 RNF39Q9H2S5 420 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 PIDD1Q9HB75 910 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 MBLAC1A4D2B0 266 aaPredicted RBP12.1□□□□□ -0.47
VPS4A-201ENST00000254950 KCNN4O15554 427 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 ITIH2P19823 946 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 SLC39A12Q504Y0 691 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 ITPRIPL1Q6GPH6 555 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 SLFN11Q7Z7L1 901 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 CCDC13Q8IYE1 715 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 RIN2Q8WYP3 895 aaPredicted RBP12.1□□□□□ -0.47
VPS4A-201ENST00000254950 KRT35Q92764 455 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 PGLYRP2Q96PD5 576 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 FBXO44Q9H4M3 255 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 GPATCH2LQ9NWQ4 482 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 PCDHGC3Q9UN70 934 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 AP4E1Q9UPM8 1137 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 F8VP50 259 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 PYGMP11217 842 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 DEFB106AQ8N104 65 aa12.1□□□□□ -0.47
VPS4A-201ENST00000254950 DDX50Q9BQ39 737 aaKnown RBP12.1□□□□□ -0.47
VPS4A-201ENST00000254950 FRMD8P1Q9BZ68 369 aaPredicted RBP12.1□□□□□ -0.47
VPS4A-201ENST00000254950 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.1□□□□□ -0.47
VPS4A-201ENST00000254950 RASGRF2O14827 1237 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 TLE2Q04725 743 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 PDK1Q15118 436 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 PTPN20Q4JDL3 420 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 KCTD16Q68DU8 428 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 PID1Q7Z2X4 250 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 SLC4A11Q8NBS3 891 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 ZNF784Q8NCA9 323 aaPredicted RBP12.09□□□□□ -0.47
VPS4A-201ENST00000254950 ZNF558Q96NG5 402 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 TRAIPQ9BWF2 469 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 MYH9P35579 1960 aaKnown RBP12.09□□□□□ -0.47
VPS4A-201ENST00000254950 A0A0U1RQF3 1178 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 CHRNB2P17787 502 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 EPHB2P29323 1055 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 MIPP30301 263 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 PMS2P54278 862 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 HHATQ5VTY9 493 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 TMC7Q7Z402 723 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 CTU1Q7Z7A3 348 aaKnown RBP12.09□□□□□ -0.47
VPS4A-201ENST00000254950 ECHDC2Q86YB7 292 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 ATG4AQ8WYN0 398 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 CNTN3Q9P232 1028 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 EXOC1LA0A1B0GW35 172 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 LTFP02788 710 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 KCNE1P15382 129 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 ASPAP45381 313 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 CARSP49589 748 aaKnown RBP12.09□□□□□ -0.47
VPS4A-201ENST00000254950 CLCNKBP51801 687 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 LRRC38Q5VT99 294 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 FAM183BPQ6ZVS7 135 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 LMO3Q8TAP4 145 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 ATP2A3Q93084 1043 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 PPP2R3CQ969Q6 453 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 TTC25Q96NG3 672 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 SPON2Q9BUD6 331 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 L1RE1Q9UN81 338 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 PLAAQ9Y263 795 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 GOLGA8MH3BSY2 632 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 EFCAB14O75071 495 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 SLC12A2P55011 1212 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 RPL7AP62424 266 aaKnown RBP12.09□□□□□ -0.47
VPS4A-201ENST00000254950 C1orf220Q5T0J3 134 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 LRRC43Q8N309 656 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 TFAP2BQ92481 460 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 DPF3Q92784 378 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 CATSPERBQ9H7T0 1116 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 TRPC7Q9HCX4 862 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms