RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 FBXO28Q9NVF7 368 aa14.98□□□□□ -0.01
SDC1-201ENST00000254351 A0A088AWK7 358 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 CD1EP15812 388 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 PMLP29590 882 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 LMNB2Q03252 620 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 TCEAL1Q15170 157 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 CYTH1Q15438 398 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 NPNTQ6UXI9 565 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 EMC1Q8N766 993 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.97□□□□□ -0.011e-7■■□□□ 12.2
SDC1-201ENST00000254351 HSPH1Q92598 858 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 IWS1Q96ST2 819 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 ACSS3Q9H6R3 686 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 TMEM8AQ9HCN3 771 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 SLC17A6Q9P2U8 582 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 INPP5FQ9Y2H2 1132 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 FOXD2O60548 495 aaPredicted RBP14.97□□□□□ -0.01
SDC1-201ENST00000254351 POLR2MP0CAP2 368 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 KCNA4P22459 653 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 RARRES1P49788 294 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 ORC1Q13415 861 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 WDR44Q5JSH3 913 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 MON1BQ7L1V2 547 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 DEFB107AQ8IZN7 70 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 APOPT1Q96IL0 206 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 IFT122Q9HBG6 1241 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 ARHGEF38Q9NXL2 777 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 DDX43Q9NXZ2 648 aaKnown RBP14.97□□□□□ -0.01
SDC1-201ENST00000254351 MAD1L1Q9Y6D9 718 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 IQANK1A0A1B0GTG1 560 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 PSTPIP1O43586 416 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 ADCY3O60266 1144 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 CLPTM1O96005 669 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 UQCRBP14927 111 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 RAP1GDS1P52306 607 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 KRT72Q14CN4 511 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 KLHL38Q2WGJ6 581 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 NADK2Q4G0N4 442 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 KLHDC10Q6PID8 442 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 ACAD11Q709F0 780 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 NCAPG2Q86XI2 1143 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 RELL1Q8IUW5 271 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 CPXCR1Q8N123 301 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 IL31RAQ8NI17 732 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 FEZF2Q8TBJ5 459 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 ZNF398Q8TD17 642 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 MZB1Q8WU39 189 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 FAM172AQ8WUF8 416 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 TJP2Q9UDY2 1190 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 PLA2G4CQ9UP65 541 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 PCDHB2Q9Y5E7 798 aa14.97□□□□□ -0.01
SDC1-201ENST00000254351 KIF13BQ9NQT8 1826 aa14.96□□□□□ -0.01
SDC1-201ENST00000254351 CIITAP33076 1130 aa14.96□□□□□ -0.01
SDC1-201ENST00000254351 NT5C2P49902 561 aa14.96□□□□□ -0.01
SDC1-201ENST00000254351 PDK1Q15118 436 aa14.96□□□□□ -0.01
SDC1-201ENST00000254351 NFIL3Q16649 462 aa14.96□□□□□ -0.01
SDC1-201ENST00000254351 SCARA5Q6ZMJ2 495 aa14.96□□□□□ -0.01
SDC1-201ENST00000254351 CRLF3Q8IUI8 442 aa14.96□□□□□ -0.01
SDC1-201ENST00000254351 NLGN1Q8N2Q7 840 aa14.96□□□□□ -0.01
SDC1-201ENST00000254351 ICA1LQ8NDH6 482 aa14.96□□□□□ -0.01
SDC1-201ENST00000254351 ZNF516Q92618 1163 aa14.96□□□□□ -0.01
SDC1-201ENST00000254351 MOCOSQ96EN8 888 aa14.96□□□□□ -0.01
SDC1-201ENST00000254351 PLEKHG4BQ96PX9 1271 aa14.96□□□□□ -0.01
SDC1-201ENST00000254351 CSRNP1Q96S65 589 aa14.96□□□□□ -0.01
SDC1-201ENST00000254351 HAPLN3Q96S86 360 aa14.96□□□□□ -0.01
SDC1-201ENST00000254351 CAPN14A8MX76 684 aa14.96□□□□□ -0.02
SDC1-201ENST00000254351 MAGEC1O60732 1142 aa14.96□□□□□ -0.02
SDC1-201ENST00000254351 DGKIO75912 1065 aa14.96□□□□□ -0.02
SDC1-201ENST00000254351 DESP17661 470 aa14.96□□□□□ -0.02
SDC1-201ENST00000254351 ITGB5P18084 799 aa14.96□□□□□ -0.02
SDC1-201ENST00000254351 YWHABP31946 246 aaKnown RBP14.96□□□□□ -0.02
SDC1-201ENST00000254351 ETV4P43268 484 aa14.96□□□□□ -0.02
SDC1-201ENST00000254351 TLR1Q15399 786 aa14.96□□□□□ -0.02
SDC1-201ENST00000254351 ABCB5Q2M3G0 1257 aa14.96□□□□□ -0.02
SDC1-201ENST00000254351 DEFB132Q7Z7B7 95 aa14.96□□□□□ -0.02
SDC1-201ENST00000254351 SESTD1Q86VW0 696 aa14.96□□□□□ -0.02
SDC1-201ENST00000254351 PPIL6Q8IXY8 311 aa14.96□□□□□ -0.02
SDC1-201ENST00000254351 ACER1Q8TDN7 264 aa14.96□□□□□ -0.02
SDC1-201ENST00000254351 DBNDD1Q9H9R9 158 aa14.96□□□□□ -0.02
SDC1-201ENST00000254351 MRPL47Q9HD33 250 aaKnown RBP14.96□□□□□ -0.02
SDC1-201ENST00000254351 STRIP2Q9ULQ0 834 aa14.96□□□□□ -0.02
SDC1-201ENST00000254351 LZTS1Q9Y250 596 aa14.96□□□□□ -0.02
SDC1-201ENST00000254351 GAKO14976 1311 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 ZNF536O15090 1300 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 ITM2AO43736 263 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 SERPINB2P05120 415 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 MYCLP12524 364 aaPredicted RBP14.95□□□□□ -0.02
SDC1-201ENST00000254351 TCN1P20061 433 aaPredicted RBP14.95□□□□□ -0.02
SDC1-201ENST00000254351 RPL10AP62906 217 aaKnown RBP14.95□□□□□ -0.02
SDC1-201ENST00000254351 PRR5LQ6MZQ0 368 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 DUS1LQ6P1R4 473 aaKnown RBP14.95□□□□□ -0.02
SDC1-201ENST00000254351 RCOR2Q8IZ40 523 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 NDUFAF2Q8N183 169 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 KCNH7Q9NS40 1196 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 TBX20Q9UMR3 447 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 POLRMTO00411 1230 aaKnown RBP14.95□□□□□ -0.02
SDC1-201ENST00000254351 CFLARO15519 480 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 PABPC4LP0CB38 370 aaKnown RBP14.95□□□□□ -0.02
SDC1-201ENST00000254351 CHN2P52757 468 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 ZNF252P-AS1Q0IIN9 211 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms