RNA–Protein interactions for RNA: ENST00000239243.6

MSX2-201, Transcript of msh homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX2, Length 2,241 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2-201ENST00000239243 CCDC14Q49A88 953 aa24.37■■□□□ 1.49
MSX2-201ENST00000239243 BOLA3Q53S33 107 aa24.37■■□□□ 1.49
MSX2-201ENST00000239243 TRNP1Q6NT89 227 aa24.37■■□□□ 1.49
MSX2-201ENST00000239243 MAP7D3Q8IWC1 876 aa24.37■■□□□ 1.49
MSX2-201ENST00000239243 SCUBE3Q8IX30 993 aa24.37■■□□□ 1.49
MSX2-201ENST00000239243 B3GALNT2Q8NCR0 500 aa24.37■■□□□ 1.49
MSX2-201ENST00000239243 TBCBQ99426 244 aa24.37■■□□□ 1.49
MSX2-201ENST00000239243 CYB561D2O14569 222 aa24.37■■□□□ 1.49
MSX2-201ENST00000239243 GRAP2O75791 330 aa24.37■■□□□ 1.49
MSX2-201ENST00000239243 THPOP40225 353 aa24.37■■□□□ 1.49
MSX2-201ENST00000239243 MLH1P40692 756 aa24.37■■□□□ 1.49
MSX2-201ENST00000239243 ZNF618Q5T7W0 954 aa24.37■■□□□ 1.49
MSX2-201ENST00000239243 CCSAPQ6IQ19 270 aaPredicted RBP24.37■■□□□ 1.49
MSX2-201ENST00000239243 SLC26A9Q7LBE3 791 aa24.37■■□□□ 1.49
MSX2-201ENST00000239243 SLC2A14Q8TDB8 520 aa24.37■■□□□ 1.49
MSX2-201ENST00000239243 TEKT4Q8WW24 435 aa24.37■■□□□ 1.49
MSX2-201ENST00000239243 TMEM109Q9BVC6 243 aa24.37■■□□□ 1.49
MSX2-201ENST00000239243 ERICH4A6NGS2 130 aa24.36■■□□□ 1.49
MSX2-201ENST00000239243 APOC4-APOC2K7ER74 178 aa24.36■■□□□ 1.49
MSX2-201ENST00000239243 ENDOD1O94919 500 aa24.36■■□□□ 1.49
MSX2-201ENST00000239243 APOC2P02655 101 aa24.36■■□□□ 1.49
MSX2-201ENST00000239243 PDK2Q15119 407 aa24.36■■□□□ 1.49
MSX2-201ENST00000239243 C15orf59Q2T9L4 293 aaPredicted RBP24.36■■□□□ 1.49
MSX2-201ENST00000239243 P3H1Q32P28 736 aa24.36■■□□□ 1.49
MSX2-201ENST00000239243 RFX6Q8HWS3 928 aa24.36■■□□□ 1.49
MSX2-201ENST00000239243 HAUS1Q96CS2 278 aa24.36■■□□□ 1.49
MSX2-201ENST00000239243 CALN1Q9BXU9 219 aa24.36■■□□□ 1.49
MSX2-201ENST00000239243 PCDH9Q9HC56 1237 aa24.36■■□□□ 1.49
MSX2-201ENST00000239243 HCRTO43612 131 aa24.35■■□□□ 1.49
MSX2-201ENST00000239243 CABYRO75952 493 aa24.35■■□□□ 1.49
MSX2-201ENST00000239243 MYCNP04198 464 aaPredicted RBP24.35■■□□□ 1.49
MSX2-201ENST00000239243 ARSEP51690 589 aa24.35■■□□□ 1.49
MSX2-201ENST00000239243 DYNLT1P63172 113 aa24.35■■□□□ 1.49
MSX2-201ENST00000239243 OTUD4Q01804 1114 aaKnown RBP24.35■■□□□ 1.49
MSX2-201ENST00000239243 TFDP2Q14188 446 aa24.35■■□□□ 1.49
MSX2-201ENST00000239243 CDO1Q16878 200 aa24.35■■□□□ 1.49
MSX2-201ENST00000239243 DNAJC21Q5F1R6 531 aaKnown RBP24.35■■□□□ 1.49
MSX2-201ENST00000239243 MRPL10Q7Z7H8 261 aaKnown RBP24.35■■□□□ 1.49
MSX2-201ENST00000239243 ACTL9Q8TC94 416 aa24.35■■□□□ 1.49
MSX2-201ENST00000239243 CFAP57Q96MR6 1250 aa24.35■■□□□ 1.49
MSX2-201ENST00000239243 PEBP4Q96S96 227 aa24.35■■□□□ 1.49
MSX2-201ENST00000239243 GAD1Q99259 594 aa24.35■■□□□ 1.49
MSX2-201ENST00000239243 HNRNPABQ99729 332 aaKnown RBP24.35■■□□□ 1.49
MSX2-201ENST00000239243 MAK16Q9BXY0 300 aaKnown RBP24.35■■□□□ 1.49
MSX2-201ENST00000239243 CDC42EP4Q9H3Q1 356 aaKnown RBP24.35■■□□□ 1.49
MSX2-201ENST00000239243 AAASQ9NRG9 546 aa24.35■■□□□ 1.49
MSX2-201ENST00000239243 STAU2Q9NUL3 570 aaKnown RBP eCLIP24.35■■□□□ 1.49
MSX2-201ENST00000239243 BCCIPQ9P287 314 aaKnown RBP eCLIP24.35■■□□□ 1.49
MSX2-201ENST00000239243 DNALI1O14645 258 aaPredicted RBP24.35■■□□□ 1.49
MSX2-201ENST00000239243 XPO1O14980 1071 aaKnown RBP24.35■■□□□ 1.49
MSX2-201ENST00000239243 HOXD10P28358 340 aa24.35■■□□□ 1.49
MSX2-201ENST00000239243 PTPN9P43378 593 aa24.35■■□□□ 1.49
MSX2-201ENST00000239243 HIBCHQ6NVY1 386 aaPredicted RBP24.35■■□□□ 1.49
MSX2-201ENST00000239243 VSIG1Q86XK7 387 aa24.35■■□□□ 1.49
MSX2-201ENST00000239243 TMEM86AQ8N2M4 240 aa24.35■■□□□ 1.49
MSX2-201ENST00000239243 NGRNQ9NPE2 291 aaKnown RBP24.35■■□□□ 1.49
MSX2-201ENST00000239243 SGK1O00141 431 aa24.34■■□□□ 1.49
MSX2-201ENST00000239243 GABRDO14764 452 aa24.34■■□□□ 1.49
MSX2-201ENST00000239243 RDXP35241 583 aaKnown RBP24.34■■□□□ 1.49
MSX2-201ENST00000239243 CDH6P55285 790 aa24.34■■□□□ 1.49
MSX2-201ENST00000239243 SH3PXD2AQ5TCZ1 1133 aa24.34■■□□□ 1.49
MSX2-201ENST00000239243 GSTCDQ8NEC7 633 aa24.34■■□□□ 1.49
MSX2-201ENST00000239243 FAM172AQ8WUF8 416 aa24.34■■□□□ 1.49
MSX2-201ENST00000239243 KHSRPQ92945 711 aaKnown RBP eCLIP24.34■■□□□ 1.49
MSX2-201ENST00000239243 PGM2Q96G03 612 aa24.34■■□□□ 1.49
MSX2-201ENST00000239243 LPIN3Q9BQK8 851 aa24.34■■□□□ 1.49
MSX2-201ENST00000239243 ZNF623O75123 536 aa24.34■■□□□ 1.49
MSX2-201ENST00000239243 CD48P09326 243 aa24.34■■□□□ 1.49
MSX2-201ENST00000239243 ELNP15502 786 aa24.34■■□□□ 1.49
MSX2-201ENST00000239243 RPL9P32969 192 aaKnown RBP24.34■■□□□ 1.49
MSX2-201ENST00000239243 ATP11AP98196 1134 aa24.34■■□□□ 1.49
MSX2-201ENST00000239243 PTK7Q13308 1070 aa24.34■■□□□ 1.49
MSX2-201ENST00000239243 C6orf118Q5T5N4 469 aa24.34■■□□□ 1.49
MSX2-201ENST00000239243 CYP4V2Q6ZWL3 525 aaPredicted RBP24.34■■□□□ 1.49
MSX2-201ENST00000239243 RNF180Q86T96 592 aa24.34■■□□□ 1.49
MSX2-201ENST00000239243 OSTM1Q86WC4 334 aa24.34■■□□□ 1.49
MSX2-201ENST00000239243 RELL1Q8IUW5 271 aa24.34■■□□□ 1.49
MSX2-201ENST00000239243 ROPN1BQ9BZX4 212 aaPredicted RBP24.34■■□□□ 1.49
MSX2-201ENST00000239243 AGO3Q9H9G7 860 aaKnown RBP24.34■■□□□ 1.49
MSX2-201ENST00000239243 ROPN1Q9HAT0 212 aaPredicted RBP24.34■■□□□ 1.49
MSX2-201ENST00000239243 RNF186Q9NXI6 227 aa24.34■■□□□ 1.49
MSX2-201ENST00000239243 PADI3Q9ULW8 664 aa24.34■■□□□ 1.49
MSX2-201ENST00000239243 NOD1Q9Y239 953 aa24.34■■□□□ 1.49
MSX2-201ENST00000239243 ARL5CA6NH57 179 aa24.33■■□□□ 1.49
MSX2-201ENST00000239243 GABBR2O75899 941 aa24.33■■□□□ 1.49
MSX2-201ENST00000239243 SHBGP04278 402 aa24.33■■□□□ 1.49
MSX2-201ENST00000239243 CHKAP35790 457 aa24.33■■□□□ 1.49
MSX2-201ENST00000239243 KRT81Q14533 505 aa24.33■■□□□ 1.49
MSX2-201ENST00000239243 TAF5Q15542 800 aa24.33■■□□□ 1.49
MSX2-201ENST00000239243 DUSP16Q9BY84 665 aa24.33■■□□□ 1.49
MSX2-201ENST00000239243 B3GNT5Q9BYG0 378 aa24.33■■□□□ 1.49
MSX2-201ENST00000239243 STMN4Q9H169 189 aaPredicted RBP24.33■■□□□ 1.49
MSX2-201ENST00000239243 TPX2Q9ULW0 747 aaKnown RBP24.33■■□□□ 1.49
MSX2-201ENST00000239243 MEIS3P2A8K0S8 358 aa24.33■■□□□ 1.48
MSX2-201ENST00000239243 KIF3CO14782 793 aa24.33■■□□□ 1.48
MSX2-201ENST00000239243 MCF2LO15068 1137 aa24.33■■□□□ 1.48
MSX2-201ENST00000239243 MDM4O15151 490 aa24.33■■□□□ 1.48
MSX2-201ENST00000239243 PTPN1P18031 435 aaKnown RBP24.33■■□□□ 1.48
MSX2-201ENST00000239243 LHX1P48742 406 aa24.33■■□□□ 1.48
MSX2-201ENST00000239243 EFHC1Q5JVL4 640 aa24.33■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms