RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 HHATQ5VTY9 493 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 XYLT1Q86Y38 959 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 CCDC110Q8TBZ0 833 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 MRPL47Q9HD33 250 aaKnown RBP11.19□□□□□ -0.62
USP28-201ENST00000003302 PDGFCQ9NRA1 345 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 IP6K2Q9UHH9 426 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 SOWAHBA6NEL2 793 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 GEMIN4P57678 1058 aaKnown RBP11.18□□□□□ -0.62
USP28-201ENST00000003302 ACVR2BQ13705 512 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 THEMIS2Q5TEJ8 643 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 ANGEL2Q5VTE6 544 aaKnown RBP11.18□□□□□ -0.62
USP28-201ENST00000003302 FOXB2Q5VYV0 432 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 FMNL3Q8IVF7 1028 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 NKD2Q969F2 451 aaPredicted RBP11.18□□□□□ -0.62
USP28-201ENST00000003302 GPRASP2Q96D09 838 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.18□□□□□ -0.62
USP28-201ENST00000003302 PSMC3IPQ9P2W1 217 aaPredicted RBP11.18□□□□□ -0.62
USP28-201ENST00000003302 ZFP69BQ9UJL9 534 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 USH1CQ9Y6N9 552 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 CSH1P0DML2 217 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 CSH2P0DML3 217 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 ABCG1P45844 678 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 IGBP1P78318 339 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 TARBP2Q15633 366 aaKnown RBP11.18□□□□□ -0.62
USP28-201ENST00000003302 C16orf46Q6P387 395 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 RCOR2Q8IZ40 523 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 NAF1Q96HR8 494 aaKnown RBP11.18□□□□□ -0.62
USP28-201ENST00000003302 ADCY3O60266 1144 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 LYPLA1O75608 230 aaPredicted RBP11.18□□□□□ -0.62
USP28-201ENST00000003302 CCND1P24385 295 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 MORF4L2Q15014 288 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 NIM1KQ8IY84 436 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 MAB21L3Q8N8X9 362 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 SLC4A11Q8NBS3 891 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 SLC7A3Q8WY07 619 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 DHRS4Q9BTZ2 278 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 PHIPQ8WWQ0 1821 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 SIGLEC16A6NMB1 481 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 ZBTB7AO95365 584 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 MYCNP04198 464 aaPredicted RBP11.18□□□□□ -0.62
USP28-201ENST00000003302 ITGAVP06756 1048 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 ARL4CP56559 192 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 CLUL1Q15846 466 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 RNF220Q5VTB9 566 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 ADGRD1Q6QNK2 874 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 PQLC3Q8N755 202 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 TMEM120AQ9BXJ8 343 aa11.18□□□□□ -0.62
USP28-201ENST00000003302 PTPRFP10586 1907 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 ZC3H11AO75152 810 aaKnown RBP eCLIP11.17□□□□□ -0.627e-6■■■■■ 33.7
USP28-201ENST00000003302 MYL2P10916 166 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 LAMTOR4Q0VGL1 99 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 SLC10A2Q12908 348 aaPredicted RBP11.17□□□□□ -0.62
USP28-201ENST00000003302 DPYSL3Q14195 570 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 PPP1R21Q6ZMI0 780 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 ZNF677Q86XU0 584 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 ZNF280CQ8ND82 737 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 CXorf38Q8TB03 319 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 PTCD3Q96EY7 689 aaKnown RBP11.17□□□□□ -0.62
USP28-201ENST00000003302 OXCT2Q9BYC2 517 aaPredicted RBP11.17□□□□□ -0.62
USP28-201ENST00000003302 PCDH9Q9HC56 1237 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 ETNK2Q9NVF9 386 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 NMRK1Q9NWW6 199 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 METTL18O95568 372 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 AMHP03971 560 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 ABHD2P08910 425 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 CALB2P22676 271 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 RBL1P28749 1068 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 EIF3EP60228 445 aaKnown RBP11.17□□□□□ -0.62
USP28-201ENST00000003302 ZNF699Q32M78 642 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 RNF111Q6ZNA4 994 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 ENOSF1Q7L5Y1 443 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 POLNQ7Z5Q5 900 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 CAND1Q86VP6 1230 aaKnown RBP11.17□□□□□ -0.62
USP28-201ENST00000003302 RFX6Q8HWS3 928 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 BRSK2Q8IWQ3 736 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 ZNF778Q96MU6 729 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 ACO2Q99798 780 aaKnown RBP11.17□□□□□ -0.62
USP28-201ENST00000003302 ACSS3Q9H6R3 686 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 ZNF358Q9NW07 568 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 CPSF3Q9UKF6 684 aaKnown RBP11.17□□□□□ -0.62
USP28-201ENST00000003302 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.17□□□□□ -0.62
USP28-201ENST00000003302 HMGCRP04035 888 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 ITGB3P05106 788 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 NAMPTP43490 491 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 PTK7Q13308 1070 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 UBAP2LQ14157 1087 aaKnown RBP11.17□□□□□ -0.62
USP28-201ENST00000003302 RCN1Q15293 331 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 C4orf50Q6ZRC1 276 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 SYDE1Q6ZW31 735 aaPredicted RBP11.17□□□□□ -0.62
USP28-201ENST00000003302 CENPUQ71F23 418 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 CTU1Q7Z7A3 348 aaKnown RBP11.17□□□□□ -0.62
USP28-201ENST00000003302 PPM1NQ8N819 430 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 STK32AQ8WU08 396 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 RNPEPQ9H4A4 650 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 TXNRD2Q9NNW7 524 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 INO80B-WBP1J3KQ70 363 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 YWHAGP61981 247 aaKnown RBP eCLIP11.17□□□□□ -0.62
USP28-201ENST00000003302 PITX1P78337 314 aaPredicted RBP11.17□□□□□ -0.62
USP28-201ENST00000003302 CES3Q6UWW8 571 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 PYROXD2Q8N2H3 581 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms