RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeastyeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSL1YLR005W LDS1P31379 325 aa2.48□□□□□ -2.01
SSL1YLR005W YKR070WP36151 352 aaKnown RBP2.48□□□□□ -2.01
SSL1YLR005W YBR209WP38311 105 aa2.48□□□□□ -2.01
SSL1YLR005W HSP10P38910 106 aa2.48□□□□□ -2.01
SSL1YLR005W DAN1P47178 298 aa2.48□□□□□ -2.01
SSL1YLR005W APS2Q00381 147 aa2.48□□□□□ -2.01
SSL1YLR005W YLR118CQ12354 227 aa2.48□□□□□ -2.01
SSL1YLR005W YDR010CQ12426 110 aa2.48□□□□□ -2.01
SSL1YLR005W DDR48P18899 430 aaKnown RBP2.47□□□□□ -2.01
SSL1YLR005W HYP2P23301 157 aaKnown RBP2.47□□□□□ -2.01
SSL1YLR005W AIM29P36154 155 aa2.47□□□□□ -2.01
SSL1YLR005W SMP1P38128 452 aa2.47□□□□□ -2.01
SSL1YLR005W YBL081WP38180 368 aaKnown RBP2.47□□□□□ -2.01
SSL1YLR005W VTC1P40046 129 aaRIP-Chip data2.47□□□□□ -2.01not detected
SSL1YLR005W SNN1P48232 102 aa2.47□□□□□ -2.01
SSL1YLR005W UBC12P52491 188 aa2.47□□□□□ -2.01
SSL1YLR005W SDS23P53172 527 aa2.47□□□□□ -2.01
SSL1YLR005W PLP1Q04004 230 aa2.47□□□□□ -2.01
SSL1YLR005W YCL021W-AQ96VH3 125 aa2.47□□□□□ -2.01
SSL1YLR005W RPF1P38805 295 aaKnown RBP2.46□□□□□ -2.02
SSL1YLR005W PEX22P39718 180 aa2.46□□□□□ -2.02
SSL1YLR005W YER085CP40058 173 aa2.46□□□□□ -2.02
SSL1YLR005W YGL088WP53151 121 aa2.46□□□□□ -2.02
SSL1YLR005W YJR146WP47174 117 aa2.45□□□□□ -2.02
SSL1YLR005W YDL241WQ07738 123 aa2.45□□□□□ -2.02
SSL1YLR005W TPT1Q12272 230 aaKnown RBP2.45□□□□□ -2.02
SSL1YLR005W YOP1Q12402 180 aa2.45□□□□□ -2.02
SSL1YLR005W VMA9Q3E7B6 73 aa2.45□□□□□ -2.02
SSL1YLR005W PFY1P07274 126 aa2.44□□□□□ -2.02
SSL1YLR005W YGL010WP25338 174 aa2.44□□□□□ -2.02
SSL1YLR005W APS1P35181 156 aa2.44□□□□□ -2.02
SSL1YLR005W YKR032WP36127 104 aa2.44□□□□□ -2.02
SSL1YLR005W YEL008WP40001 126 aa2.44□□□□□ -2.02
SSL1YLR005W HAC1P41546 238 aa2.44□□□□□ -2.02
SSL1YLR005W YFL019CP43576 117 aa2.44□□□□□ -2.02
SSL1YLR005W BNS1P50084 137 aa2.44□□□□□ -2.02
SSL1YLR005W MGR2Q02889 113 aa2.44□□□□□ -2.02
SSL1YLR005W YOR008C-AQ3E7B9 74 aa2.44□□□□□ -2.02
SSL1YLR005W YNR034W-AQ3E841 98 aa2.44□□□□□ -2.02
SSL1YLR005W RPL23AP0CX41 137 aaKnown RBP2.43□□□□□ -2.02
SSL1YLR005W RPL23BP0CX42 137 aaKnown RBP2.43□□□□□ -2.02
SSL1YLR005W NHP6AP11632 93 aaKnown RBP2.43□□□□□ -2.02
SSL1YLR005W SRB6P32570 121 aa2.43□□□□□ -2.02
SSL1YLR005W TOA2P32774 122 aa2.43□□□□□ -2.02
SSL1YLR005W YBR219CP38317 127 aa2.43□□□□□ -2.02
SSL1YLR005W TOS6P48560 102 aa2.43□□□□□ -2.02
SSL1YLR005W PAM17P36147 197 aa2.42□□□□□ -2.02
SSL1YLR005W PKR1Q03880 122 aaKnown RBP2.42□□□□□ -2.02
SSL1YLR005W YER078W-AQ3E7A2 54 aa2.42□□□□□ -2.02
SSL1YLR005W YAL065CO13511 128 aa2.41□□□□□ -2.02
SSL1YLR005W AQY2P0CD90 149 aa2.41□□□□□ -2.02
SSL1YLR005W CWP2P43497 92 aa2.41□□□□□ -2.02
SSL1YLR005W YGL149WP53116 101 aa2.41□□□□□ -2.02
SSL1YLR005W FSF1Q12029 327 aaKnown RBP2.41□□□□□ -2.02
SSL1YLR005W YCR024C-BQ3E7Z8 88 aa2.41□□□□□ -2.02
SSL1YLR005W Q0032Q9ZZX7 96 aa2.41□□□□□ -2.02
SSL1YLR005W ADH3P07246 375 aaKnown RBP2.4□□□□□ -2.02
SSL1YLR005W YKL070WP36087 169 aa2.4□□□□□ -2.02
SSL1YLR005W PET8P38921 284 aa2.4□□□□□ -2.02
SSL1YLR005W COX14P39103 70 aa2.4□□□□□ -2.02
SSL1YLR005W YMR295CQ03559 197 aa2.4□□□□□ -2.02
SSL1YLR005W ATP14Q12349 124 aa2.4□□□□□ -2.02
SSL1YLR005W FMP16Q12497 93 aa2.4□□□□□ -2.02
SSL1YLR005W WIP1Q2V2P8 89 aa2.4□□□□□ -2.02
SSL1YLR005W RPS22BQ3E7Y3 130 aaKnown RBP2.4□□□□□ -2.02
SSL1YLR005W POR1P04840 283 aaKnown RBP2.39□□□□□ -2.03
SSL1YLR005W OXA1P39952 402 aa2.39□□□□□ -2.03
SSL1YLR005W YJR085CP47131 105 aaKnown RBP2.39□□□□□ -2.03
SSL1YLR005W ERV14P53173 138 aa2.39□□□□□ -2.03
SSL1YLR005W CMC4Q3E7A9 73 aa2.39□□□□□ -2.03
SSL1YLR005W YER039C-AP0CD97 72 aa2.38□□□□□ -2.03
SSL1YLR005W PAU19P0CE85 124 aa2.38□□□□□ -2.03
SSL1YLR005W PAU21P0CE86 164 aa2.38□□□□□ -2.03
SSL1YLR005W PAU22P0CE87 164 aa2.38□□□□□ -2.03
SSL1YLR005W CNB1P25296 175 aa2.38□□□□□ -2.03
SSL1YLR005W PAU3P25610 124 aa2.38□□□□□ -2.03
SSL1YLR005W PAU15P40585 124 aa2.38□□□□□ -2.03
SSL1YLR005W YDR042CQ03205 200 aa2.38□□□□□ -2.03
SSL1YLR005W YBL039W-BP0C268 59 aa2.37□□□□□ -2.03
SSL1YLR005W RPL31AP0C2H8 113 aaKnown RBP2.37□□□□□ -2.03
SSL1YLR005W YLR156WP0CE96 114 aa2.37□□□□□ -2.03
SSL1YLR005W YLR159WP0CE97 114 aa2.37□□□□□ -2.03
SSL1YLR005W YLR161WP0CE98 114 aa2.37□□□□□ -2.03
SSL1YLR005W YEL045CP32616 141 aa2.37□□□□□ -2.03
SSL1YLR005W NTF2P33331 125 aaKnown RBP2.37□□□□□ -2.03
SSL1YLR005W KNH1P50112 268 aa2.37□□□□□ -2.03
SSL1YLR005W YGL193CP53097 103 aa2.37□□□□□ -2.03
SSL1YLR005W CMC2Q3E7A4 109 aa2.37□□□□□ -2.03
SSL1YLR005W YPR014CQ6B0W2 109 aa2.37□□□□□ -2.03
SSL1YLR005W SEC4P07560 215 aaKnown RBP2.36□□□□□ -2.03
SSL1YLR005W RPL18AP0CX49 186 aaKnown RBP2.36□□□□□ -2.03
SSL1YLR005W RPL18BP0CX50 186 aaKnown RBP2.36□□□□□ -2.03
SSL1YLR005W HMRA2P0CY13 119 aa2.36□□□□□ -2.03
SSL1YLR005W YGL118CP53132 145 aa2.36□□□□□ -2.03
SSL1YLR005W SMD1Q02260 146 aaPredicted RBP2.36□□□□□ -2.03
SSL1YLR005W ABF2Q02486 183 aa2.36□□□□□ -2.03
SSL1YLR005W YOR268CQ08734 132 aa2.36□□□□□ -2.03
SSL1YLR005W HTL1Q9URQ5 78 aa2.36□□□□□ -2.03
SSL1YLR005W UBC4P15731 148 aa2.36□□□□□ -2.03
SSL1YLR005W PRE1P22141 198 aaKnown RBP2.36□□□□□ -2.03
Retrieved 100 of 5,963 RNA–protein pairs in 208 ms