RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeastyeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF4YKR036C RPL2AP0CX45 254 aaKnown RBP3.87□□□□□ -1.79
CAF4YKR036C RPL2BP0CX46 254 aaKnown RBP3.87□□□□□ -1.79
CAF4YKR036C YCR022CP25620 114 aa3.87□□□□□ -1.79
CAF4YKR036C YGR018CP53211 109 aa3.87□□□□□ -1.79
CAF4YKR036C MRPL23Q12487 163 aaPredicted RBP3.87□□□□□ -1.79
CAF4YKR036C RPS16AP0CX51 143 aaKnown RBP3.86□□□□□ -1.79
CAF4YKR036C RPS16BP0CX52 143 aaKnown RBP3.86□□□□□ -1.79
CAF4YKR036C YHR214C-DP0CX93 97 aa3.86□□□□□ -1.79
CAF4YKR036C YKR073CP36153 106 aa3.86□□□□□ -1.79
CAF4YKR036C AIM11P87275 137 aa3.86□□□□□ -1.79
CAF4YKR036C GPI19Q04082 140 aa3.86□□□□□ -1.79
CAF4YKR036C YDR381C-AQ3E6R5 114 aa3.86□□□□□ -1.79
CAF4YKR036C YCR050CP25630 102 aa3.85□□□□□ -1.79
CAF4YKR036C INO2P26798 304 aa3.85□□□□□ -1.79
CAF4YKR036C SVP26P38869 228 aa3.85□□□□□ -1.79
CAF4YKR036C ATP23P53722 227 aa3.85□□□□□ -1.79
CAF4YKR036C SHH4Q06236 168 aa3.85□□□□□ -1.79
CAF4YKR036C IRC23Q08416 157 aa3.85□□□□□ -1.79
CAF4YKR036C DAD1Q12248 94 aa3.85□□□□□ -1.79
CAF4YKR036C HMRA2P0CY13 119 aa3.85□□□□□ -1.79
CAF4YKR036C RPL15BP54780 204 aaPredicted RBP3.85□□□□□ -1.79
CAF4YKR036C SDC1Q03323 175 aa3.85□□□□□ -1.79
CAF4YKR036C KTI11Q3E840 82 aa3.85□□□□□ -1.79
CAF4YKR036C KTI12P34253 313 aaKnown RBP3.84□□□□□ -1.79
CAF4YKR036C REE1P40893 198 aa3.84□□□□□ -1.79
CAF4YKR036C TOS6P48560 102 aa3.84□□□□□ -1.79
CAF4YKR036C SEC16P48415 2195 aaKnown RBP3.84□□□□□ -1.8
CAF4YKR036C MBB1P39534 108 aa3.83□□□□□ -1.8
CAF4YKR036C VHS2P40463 436 aa3.83□□□□□ -1.8
CAF4YKR036C GON7P46984 123 aa3.83□□□□□ -1.8
CAF4YKR036C SPS100P13130 326 aa3.83□□□□□ -1.8
CAF4YKR036C YHL018WP38744 120 aaPredicted RBP3.83□□□□□ -1.8
CAF4YKR036C SPI1P40092 148 aa3.83□□□□□ -1.8
CAF4YKR036C YLR194CQ05777 254 aa3.83□□□□□ -1.8
CAF4YKR036C PBI2P0CT04 75 aaKnown RBP3.82□□□□□ -1.8
CAF4YKR036C RPL42AP0CX27 106 aaKnown RBP3.82□□□□□ -1.8
CAF4YKR036C RPL42BP0CX28 106 aaKnown RBP3.82□□□□□ -1.8
CAF4YKR036C YLR042CQ07990 161 aa3.82□□□□□ -1.8
CAF4YKR036C YMR175W-AQ3E766 64 aa3.82□□□□□ -1.8
CAF4YKR036C YHR213WP0CI67 198 aa3.82□□□□□ -1.8
CAF4YKR036C IES6P32617 166 aa3.82□□□□□ -1.8
CAF4YKR036C SIM1P40472 476 aa3.82□□□□□ -1.8
CAF4YKR036C MRPS12P53732 153 aa3.82□□□□□ -1.8
CAF4YKR036C YLR342W-AQ3E810 57 aa3.82□□□□□ -1.8
CAF4YKR036C YBL071CP38185 102 aa3.81□□□□□ -1.8
CAF4YKR036C YMR320WQ04897 101 aa3.81□□□□□ -1.8
CAF4YKR036C PRM7Q12459 698 aa3.81□□□□□ -1.8
CAF4YKR036C YLR412C-AQ3E742 68 aa3.81□□□□□ -1.8
CAF4YKR036C KSH1Q8TGJ3 72 aa3.81□□□□□ -1.8
CAF4YKR036C ADH5P38113 351 aaKnown RBP3.8□□□□□ -1.8
CAF4YKR036C AIM19P40502 157 aa3.8□□□□□ -1.8
CAF4YKR036C YGR164WP53291 111 aa3.8□□□□□ -1.8
CAF4YKR036C TRP1P00912 224 aa3.8□□□□□ -1.8
CAF4YKR036C YHL037CP38733 133 aa3.8□□□□□ -1.8
CAF4YKR036C GLE2P40066 365 aa3.8□□□□□ -1.8
CAF4YKR036C MRPL19P53875 158 aa3.8□□□□□ -1.8
CAF4YKR036C RRS1Q08746 203 aaKnown RBP3.8□□□□□ -1.8
CAF4YKR036C BLM10P43583 2143 aa3.79□□□□□ -1.8
CAF4YKR036C RPL18AP0CX49 186 aaKnown RBP3.79□□□□□ -1.8
CAF4YKR036C RPL18BP0CX50 186 aaKnown RBP3.79□□□□□ -1.8
CAF4YKR036C RRT13P40042 185 aa3.79□□□□□ -1.8
CAF4YKR036C YER187WP40102 141 aa3.79□□□□□ -1.8
CAF4YKR036C TIM10P87108 93 aa3.79□□□□□ -1.8
CAF4YKR036C YMR181CQ03231 154 aa3.79□□□□□ -1.8
CAF4YKR036C PBA1Q05778 276 aa3.79□□□□□ -1.8
CAF4YKR036C MRPL39P36533 70 aa3.78□□□□□ -1.8
CAF4YKR036C YFL015CP43578 164 aa3.78□□□□□ -1.8
CAF4YKR036C GLO1P50107 326 aa3.78□□□□□ -1.8
CAF4YKR036C YNL190WP53872 204 aa3.78□□□□□ -1.8
CAF4YKR036C MSA2P36157 363 aa3.78□□□□□ -1.81
CAF4YKR036C YSY6P38374 65 aa3.78□□□□□ -1.81
CAF4YKR036C MPC2P38857 129 aa3.78□□□□□ -1.81
CAF4YKR036C IMP2P46972 177 aa3.78□□□□□ -1.81
CAF4YKR036C YOR008C-AQ3E7B9 74 aa3.78□□□□□ -1.81
CAF4YKR036C CCW14O13547 238 aa3.77□□□□□ -1.81
CAF4YKR036C RPL28P02406 149 aaKnown RBP3.77□□□□□ -1.81
CAF4YKR036C EMC6Q12431 108 aa3.77□□□□□ -1.81
CAF4YKR036C YDR246W-AQ3E763 66 aa3.77□□□□□ -1.81
CAF4YKR036C ATP15P21306 62 aa3.76□□□□□ -1.81
CAF4YKR036C YKR045CP36138 183 aa3.76□□□□□ -1.81
CAF4YKR036C MTC6P38849 526 aa3.76□□□□□ -1.81
CAF4YKR036C YNL194CP40169 301 aa3.76□□□□□ -1.81
CAF4YKR036C HAL1Q01766 294 aa3.76□□□□□ -1.81
CAF4YKR036C YDR114CQ04597 100 aa3.76□□□□□ -1.81
CAF4YKR036C Q0297Q9ZZV8 51 aa3.76□□□□□ -1.81
CAF4YKR036C DCV1P43595 202 aa3.76□□□□□ -1.81
CAF4YKR036C SPO24Q3E752 67 aa3.76□□□□□ -1.81
CAF4YKR036C BET1P22804 142 aa3.75□□□□□ -1.81
CAF4YKR036C RPL16BP26785 198 aaKnown RBP3.75□□□□□ -1.81
CAF4YKR036C MLF3P32047 452 aa3.75□□□□□ -1.81
CAF4YKR036C SFT1P43682 97 aa3.75□□□□□ -1.81
CAF4YKR036C UBC4P15731 148 aa3.74□□□□□ -1.81
CAF4YKR036C YRA2P36036 203 aaKnown RBP RIP-Chip data3.74□□□□□ -1.81not detected
CAF4YKR036C URM1P40554 99 aaPredicted RBP3.74□□□□□ -1.81
CAF4YKR036C YJL027CP47063 138 aaPredicted RBP3.74□□□□□ -1.81
CAF4YKR036C YGR219WP53307 113 aa3.74□□□□□ -1.81
CAF4YKR036C CTR2P38865 189 aa3.74□□□□□ -1.81
CAF4YKR036C YLR281CQ05863 155 aa3.74□□□□□ -1.81
CAF4YKR036C TMC1Q08422 150 aaPredicted RBP3.74□□□□□ -1.81
CAF4YKR036C YOR029WQ12243 111 aa3.74□□□□□ -1.81
Retrieved 100 of 5,963 RNA–protein pairs in 13.3 ms