RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C YPK9Q12697 1472 aa3.66□□□□□ -1.82
DEF1YKL054C SWR1Q05471 1514 aa3.66□□□□□ -1.82
DEF1YKL054C RPA12P32529 125 aaKnown RBP3.65□□□□□ -1.83
DEF1YKL054C YBR219CP38317 127 aa3.65□□□□□ -1.83
DEF1YKL054C YHL005CP38752 130 aa3.65□□□□□ -1.83
DEF1YKL054C YHR213W-AQ8TGT4 77 aa3.65□□□□□ -1.83
DEF1YKL054C COA4Q05809 96 aa3.64□□□□□ -1.83
DEF1YKL054C PRM7Q12459 698 aa3.64□□□□□ -1.83
DEF1YKL054C PFY1P07274 126 aa3.64□□□□□ -1.83
DEF1YKL054C ICS3P47034 131 aa3.64□□□□□ -1.83
DEF1YKL054C YSF3P0C074 85 aaPredicted RBP3.63□□□□□ -1.83
DEF1YKL054C YCR095W-AQ3E787 52 aa3.63□□□□□ -1.83
DEF1YKL054C SPC1P46965 94 aa3.62□□□□□ -1.83
DEF1YKL054C NHP2P32495 156 aaPredicted RBP3.62□□□□□ -1.83
DEF1YKL054C GIS2P53849 153 aaKnown RBP RIP-Chip data3.62□□□□□ -1.83not detected
DEF1YKL054C GDB1Q06625 1536 aa3.61□□□□□ -1.83
DEF1YKL054C YRF1-2P40105 1681 aa3.61□□□□□ -1.83
DEF1YKL054C YHR086W-AQ3E746 53 aa3.61□□□□□ -1.83
DEF1YKL054C YCL042WP25572 119 aa3.6□□□□□ -1.83
DEF1YKL054C TY1B-NL2Q99337 1749 aaKnown RBP3.6□□□□□ -1.83
DEF1YKL054C YMR321CQ04898 105 aa3.6□□□□□ -1.83
DEF1YKL054C YNL146C-AQ3E7Z1 64 aa3.59□□□□□ -1.83
DEF1YKL054C MRP17P28778 131 aa3.59□□□□□ -1.84
DEF1YKL054C TY1B-DR1Q03855 1755 aa3.58□□□□□ -1.84
DEF1YKL054C TY1B-DR3Q99231 1755 aa3.58□□□□□ -1.84
DEF1YKL054C CCW12Q12127 133 aa3.57□□□□□ -1.84
DEF1YKL054C YPR145C-AQ2V2P0 78 aa3.57□□□□□ -1.84
DEF1YKL054C PAU6P0CE90 120 aa3.56□□□□□ -1.84
DEF1YKL054C PAU18P0CE91 120 aa3.56□□□□□ -1.84
DEF1YKL054C MRPL38P35996 138 aaPredicted RBP3.56□□□□□ -1.84
DEF1YKL054C MHF2Q3E829 80 aa3.56□□□□□ -1.84
DEF1YKL054C SNA2P56508 79 aa3.55□□□□□ -1.84
DEF1YKL054C POL1P13382 1468 aa3.55□□□□□ -1.84
DEF1YKL054C VPS55P47111 140 aa3.54□□□□□ -1.84
DEF1YKL054C YOL118CQ08259 102 aa3.54□□□□□ -1.84
DEF1YKL054C UBR2Q07963 1872 aa3.53□□□□□ -1.84
DEF1YKL054C PAI3P01094 68 aa3.52□□□□□ -1.85
DEF1YKL054C YBR013CP38215 129 aa3.52□□□□□ -1.85
DEF1YKL054C YBL071CP38185 102 aa3.52□□□□□ -1.85
DEF1YKL054C MRPS12P53732 153 aa3.52□□□□□ -1.85
DEF1YKL054C MLP1Q02455 1875 aaKnown RBP3.51□□□□□ -1.85
DEF1YKL054C TOM6P33448 61 aa3.51□□□□□ -1.85
DEF1YKL054C NUP159P40477 1460 aa3.51□□□□□ -1.85
DEF1YKL054C MIC27P50945 234 aa3.5□□□□□ -1.85
DEF1YKL054C LCL2Q08045 131 aa3.5□□□□□ -1.85
DEF1YKL054C YCL048W-AQ2V2Q2 79 aa3.5□□□□□ -1.85
DEF1YKL054C YDR119W-AQ2V2P9 66 aa3.49□□□□□ -1.85
DEF1YKL054C SLH1P53327 1967 aaKnown RBP3.48□□□□□ -1.85
DEF1YKL054C YHL037CP38733 133 aa3.48□□□□□ -1.85
DEF1YKL054C BRR2P32639 2163 aaKnown RBP3.47□□□□□ -1.85
DEF1YKL054C YGL041C-BQ3E750 60 aa3.47□□□□□ -1.85
DEF1YKL054C AQY2P0CD90 149 aa3.46□□□□□ -1.86
DEF1YKL054C PAU8P0CE92 120 aa3.45□□□□□ -1.86
DEF1YKL054C PAU11P0CE93 120 aa3.45□□□□□ -1.86
DEF1YKL054C PAU13P38725 120 aa3.45□□□□□ -1.86
DEF1YKL054C PAU4P53427 120 aa3.45□□□□□ -1.86
DEF1YKL054C PAU10Q03050 120 aa3.45□□□□□ -1.86
DEF1YKL054C YDR381C-AQ3E6R5 114 aa3.45□□□□□ -1.86
DEF1YKL054C PAU9Q3E770 120 aa3.45□□□□□ -1.86
DEF1YKL054C IRC21Q04772 201 aa3.44□□□□□ -1.86
DEF1YKL054C YNR034W-AQ3E841 98 aa3.44□□□□□ -1.86
DEF1YKL054C RPO31P04051 1460 aa3.44□□□□□ -1.86
DEF1YKL054C CCW14O13547 238 aa3.43□□□□□ -1.86
DEF1YKL054C YFR010W-AP0C5N0 62 aa3.43□□□□□ -1.86
DEF1YKL054C PDX3P38075 228 aaKnown RBP3.43□□□□□ -1.86
DEF1YKL054C HFA1P32874 2273 aa3.43□□□□□ -1.86
DEF1YKL054C YHR214C-DP0CX93 97 aa3.43□□□□□ -1.86
DEF1YKL054C YDR210WQ03482 75 aa3.43□□□□□ -1.86
DEF1YKL054C YPL038W-AQ3E7B4 63 aa3.43□□□□□ -1.86
DEF1YKL054C TY4B-JP47024 1803 aa3.41□□□□□ -1.86
DEF1YKL054C BPT1P14772 1559 aa3.41□□□□□ -1.86
DEF1YKL054C YBR292CP38357 123 aa3.41□□□□□ -1.86
DEF1YKL054C MRX7P53869 86 aa3.41□□□□□ -1.86
DEF1YKL054C YGR240C-AQ3E786 66 aa3.41□□□□□ -1.86
DEF1YKL054C ATX1P38636 73 aa3.4□□□□□ -1.86
DEF1YKL054C YOR343CQ12484 108 aa3.4□□□□□ -1.87
DEF1YKL054C BPH1P25356 2167 aa3.4□□□□□ -1.87
DEF1YKL054C SIN3P22579 1536 aa3.39□□□□□ -1.87
DEF1YKL054C YLR255CO13574 117 aa3.39□□□□□ -1.87
DEF1YKL054C ESP1Q03018 1630 aa3.39□□□□□ -1.87
DEF1YKL054C YHR212W-AP0CX91 67 aa3.38□□□□□ -1.87
DEF1YKL054C MPC2P38857 129 aa3.38□□□□□ -1.87
DEF1YKL054C SRB8P25648 1427 aa3.37□□□□□ -1.87
DEF1YKL054C TCB3Q03640 1545 aaKnown RBP3.37□□□□□ -1.87
DEF1YKL054C PAU1P0CE88 120 aa3.36□□□□□ -1.87
DEF1YKL054C PAU14P0CE89 120 aa3.36□□□□□ -1.87
DEF1YKL054C TIM12P32830 109 aa3.36□□□□□ -1.87
DEF1YKL054C SSS1P35179 80 aa3.35□□□□□ -1.87
DEF1YKL054C PAU23Q07987 124 aa3.35□□□□□ -1.87
DEF1YKL054C YOR105WQ08504 108 aa3.35□□□□□ -1.87
DEF1YKL054C PAU17Q12370 124 aa3.35□□□□□ -1.87
DEF1YKL054C YDR010CQ12426 110 aa3.35□□□□□ -1.87
DEF1YKL054C MMS22Q06164 1454 aa3.35□□□□□ -1.87
DEF1YKL054C SCC2Q04002 1493 aa3.34□□□□□ -1.87
DEF1YKL054C YER188C-AP0C0V2 99 aa3.34□□□□□ -1.87
DEF1YKL054C YOL131WQ08270 108 aa3.34□□□□□ -1.87
DEF1YKL054C FAS2P19097 1887 aaKnown RBP3.34□□□□□ -1.87
DEF1YKL054C BSC4P53841 131 aa3.34□□□□□ -1.88
DEF1YKL054C LCL1Q02786 101 aa3.34□□□□□ -1.88
DEF1YKL054C PAU20Q08322 120 aa3.34□□□□□ -1.88
Retrieved 100 of 5,963 RNA–protein pairs in 87.3 ms