RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	FUN14	P18411	198 aa		7.74	□□□□□ -1.17
VPS60	YDR486C	MRP49	P32388	137 aa		7.74	□□□□□ -1.17
VPS60	YDR486C	APS1	P35181	156 aa		7.74	□□□□□ -1.17
VPS60	YDR486C	URM1	P40554	99 aa	Predicted RBP	7.74	□□□□□ -1.17
VPS60	YDR486C	PKR1	Q03880	122 aa	Known RBP	7.74	□□□□□ -1.17
VPS60	YDR486C	SCS22	Q6Q595	175 aa		7.74	□□□□□ -1.17
VPS60	YDR486C	ADH2	P00331	348 aa	Known RBP	7.73	□□□□□ -1.17
VPS60	YDR486C	RPS8A	P0CX39	200 aa	Known RBP	7.73	□□□□□ -1.17
VPS60	YDR486C	RPS8B	P0CX40	200 aa	Known RBP	7.73	□□□□□ -1.17
VPS60	YDR486C	ARC15	P40518	154 aa	RIP-Chip data	7.73	□□□□□ -1.17	not detected
VPS60	YDR486C	YIL059C	P40520	121 aa		7.73	□□□□□ -1.17
VPS60	YDR486C	YLR050C	Q12155	161 aa	Known RBP	7.73	□□□□□ -1.17
VPS60	YDR486C	TRP1	P00912	224 aa		7.72	□□□□□ -1.17
VPS60	YDR486C	SEC11	P15367	167 aa		7.72	□□□□□ -1.17
VPS60	YDR486C	AIM29	P36154	155 aa		7.72	□□□□□ -1.17
VPS60	YDR486C	HAC1	P41546	238 aa		7.72	□□□□□ -1.17
VPS60	YDR486C	YMR122W-A	Q3E842	84 aa		7.72	□□□□□ -1.17
VPS60	YDR486C	SAP30	P38429	201 aa		7.7	□□□□□ -1.18
VPS60	YDR486C	ERI1	P62651	68 aa	Known RBP	7.7	□□□□□ -1.18
VPS60	YDR486C	YKL070W	P36087	169 aa		7.69	□□□□□ -1.18
VPS60	YDR486C	YEL008W	P40001	126 aa		7.69	□□□□□ -1.18
VPS60	YDR486C	YGL230C	P53074	147 aa		7.69	□□□□□ -1.18
VPS60	YDR486C	SCM4	P32564	187 aa		7.68	□□□□□ -1.18
VPS60	YDR486C	RPR2	P40571	144 aa		7.68	□□□□□ -1.18
VPS60	YDR486C	NAT5	Q08689	176 aa		7.68	□□□□□ -1.18
VPS60	YDR486C	YDL157C	Q12082	118 aa		7.68	□□□□□ -1.18
VPS60	YDR486C	FYV7	Q12247	151 aa		7.68	□□□□□ -1.18
VPS60	YDR486C	RPL31A	P0C2H8	113 aa	Known RBP	7.67	□□□□□ -1.18
VPS60	YDR486C	MSL1	P40567	111 aa	Predicted RBP	7.67	□□□□□ -1.18
VPS60	YDR486C	SPC1	P46965	94 aa		7.67	□□□□□ -1.18
VPS60	YDR486C	YCL021W-A	Q96VH3	125 aa		7.67	□□□□□ -1.18
VPS60	YDR486C	ATP15	P21306	62 aa		7.66	□□□□□ -1.18
VPS60	YDR486C	YER085C	P40058	173 aa		7.66	□□□□□ -1.18
VPS60	YDR486C	NUP42	P49686	430 aa	Known RBP	7.66	□□□□□ -1.18
VPS60	YDR486C	BET5	Q03630	159 aa		7.66	□□□□□ -1.18
VPS60	YDR486C	MRPL44	P19956	98 aa		7.64	□□□□□ -1.19
VPS60	YDR486C	YLL066W-B	Q8TGJ7	56 aa		7.64	□□□□□ -1.19
VPS60	YDR486C	RPL33A	P05744	107 aa	Known RBP	7.63	□□□□□ -1.19
VPS60	YDR486C	YDL022C-A	P0C5L6	82 aa		7.63	□□□□□ -1.19
VPS60	YDR486C	RPL33B	P41056	107 aa	Known RBP	7.63	□□□□□ -1.19
VPS60	YDR486C	AIM11	P87275	137 aa		7.63	□□□□□ -1.19
VPS60	YDR486C	YPL261C	Q08976	102 aa		7.63	□□□□□ -1.19
VPS60	YDR486C	DFM1	Q12743	341 aa	Known RBP	7.62	□□□□□ -1.19
VPS60	YDR486C	YKL044W	P36092	106 aa		7.61	□□□□□ -1.19
VPS60	YDR486C	YBR219C	P38317	127 aa		7.61	□□□□□ -1.19
VPS60	YDR486C	PBA1	Q05778	276 aa		7.61	□□□□□ -1.19
VPS60	YDR486C	ATP5	P09457	212 aa		7.6	□□□□□ -1.19
VPS60	YDR486C	YCR007C	P25354	239 aa		7.6	□□□□□ -1.19
VPS60	YDR486C	YMR320W	Q04897	101 aa		7.6	□□□□□ -1.19
VPS60	YDR486C	YLR194C	Q05777	254 aa		7.6	□□□□□ -1.19
VPS60	YDR486C	YPR010C-A	A5Z2X5	72 aa		7.59	□□□□□ -1.19
VPS60	YDR486C	RPL32	P38061	130 aa	Known RBP	7.59	□□□□□ -1.19
VPS60	YDR486C	ERG28	P40030	148 aa		7.59	□□□□□ -1.19
VPS60	YDR486C	DIF1	O13577	133 aa		7.58	□□□□□ -1.2
VPS60	YDR486C	YKR041W	P36134	250 aa		7.58	□□□□□ -1.2
VPS60	YDR486C	YAR029W	P39549	74 aa		7.58	□□□□□ -1.2
VPS60	YDR486C	YMR295C	Q03559	197 aa		7.58	□□□□□ -1.2
VPS60	YDR486C	YDR115W	Q04598	105 aa		7.58	□□□□□ -1.2
VPS60	YDR486C	RTC6	O14464	93 aa		7.57	□□□□□ -1.2
VPS60	YDR486C	YPL073C	P40323	161 aa		7.57	□□□□□ -1.2
VPS60	YDR486C	YDL085C-A	Q3E7B7	68 aa	Known RBP	7.57	□□□□□ -1.2
VPS60	YDR486C	YEL067C	P39978	195 aa		7.56	□□□□□ -1.2
VPS60	YDR486C	SHU1	P38751	150 aa		7.55	□□□□□ -1.2
VPS60	YDR486C	SVP26	P38869	228 aa		7.55	□□□□□ -1.2
VPS60	YDR486C	SAE3	P89114	91 aa		7.55	□□□□□ -1.2
VPS60	YDR486C	ENV10	Q99382	181 aa		7.55	□□□□□ -1.2
VPS60	YDR486C	RPL18A	P0CX49	186 aa	Known RBP	7.54	□□□□□ -1.2
VPS60	YDR486C	RPL18B	P0CX50	186 aa	Known RBP	7.54	□□□□□ -1.2
VPS60	YDR486C	RRT15	Q3E811	62 aa		7.54	□□□□□ -1.2
VPS60	YDR486C	PEX17	P40155	199 aa		7.53	□□□□□ -1.2
VPS60	YDR486C	CIN5	P40917	295 aa		7.53	□□□□□ -1.2
VPS60	YDR486C	PAU23	Q07987	124 aa		7.53	□□□□□ -1.2
VPS60	YDR486C	PAU17	Q12370	124 aa		7.53	□□□□□ -1.2
VPS60	YDR486C	RPF1	P38805	295 aa	Known RBP	7.51	□□□□□ -1.21
VPS60	YDR486C	VTC1	P40046	129 aa	RIP-Chip data	7.51	□□□□□ -1.21	not detected
VPS60	YDR486C	RPC10	P40422	70 aa		7.51	□□□□□ -1.21
VPS60	YDR486C	YNR077C	P53758	84 aa		7.51	□□□□□ -1.21
VPS60	YDR486C	MRPS12	P53732	153 aa		7.5	□□□□□ -1.21
VPS60	YDR486C	RPL28	P02406	149 aa	Known RBP	7.49	□□□□□ -1.21
VPS60	YDR486C	RPL11A	P0C0W9	174 aa	Known RBP	7.49	□□□□□ -1.21
VPS60	YDR486C	YBL081W	P38180	368 aa	Known RBP	7.49	□□□□□ -1.21
VPS60	YDR486C	COX14	P39103	70 aa		7.49	□□□□□ -1.21
VPS60	YDR486C	RPL11B	Q3E757	174 aa	Predicted RBP	7.49	□□□□□ -1.21
VPS60	YDR486C	YMR175W-A	Q3E766	64 aa		7.49	□□□□□ -1.21
VPS60	YDR486C	IGO2	Q9P305	131 aa		7.49	□□□□□ -1.21
VPS60	YDR486C	YAL064W	P39711	94 aa		7.48	□□□□□ -1.21
VPS60	YDR486C	YPR195C	Q06594	109 aa		7.48	□□□□□ -1.21
VPS60	YDR486C	YAL065C	O13511	128 aa		7.47	□□□□□ -1.21
VPS60	YDR486C	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	7.47	□□□□□ -1.21	not detected
VPS60	YDR486C	QCR8	P08525	94 aa		7.46	□□□□□ -1.22
VPS60	YDR486C	YFR057W	P43625	151 aa		7.46	□□□□□ -1.22
VPS60	YDR486C	LSO2	Q3E772	92 aa	Known RBP	7.46	□□□□□ -1.22
VPS60	YDR486C	TOA2	P32774	122 aa		7.45	□□□□□ -1.22
VPS60	YDR486C	OXA1	P39952	402 aa		7.45	□□□□□ -1.22
VPS60	YDR486C	YNL190W	P53872	204 aa		7.45	□□□□□ -1.22
VPS60	YDR486C	PPT2	Q12036	173 aa		7.45	□□□□□ -1.22
VPS60	YDR486C	YAR023C	D6VPM8	179 aa		7.44	□□□□□ -1.22
VPS60	YDR486C	ADH1	P00330	348 aa	Known RBP	7.44	□□□□□ -1.22
VPS60	YDR486C	GLC8	P41818	229 aa		7.44	□□□□□ -1.22
VPS60	YDR486C	UGX2	P32772	223 aa		7.43	□□□□□ -1.22

Retrieved 100 of 5,963 RNA–protein pairs in 33.6 ms