RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W YMR122CQ03879 124 aa0.61□□□□□ -2.31
CDC39YCR093W FIT2Q08906 153 aa0.61□□□□□ -2.31
CDC39YCR093W SOM1Q05676 74 aa0.61□□□□□ -2.31
CDC39YCR093W YCR001WP25347 104 aa0.6□□□□□ -2.31
CDC39YCR093W FYV5P25585 152 aa0.6□□□□□ -2.31
CDC39YCR093W PDX3P38075 228 aaKnown RBP0.6□□□□□ -2.31
CDC39YCR093W ATX1P38636 73 aa0.6□□□□□ -2.31
CDC39YCR093W IPT1P38954 527 aa0.6□□□□□ -2.31
CDC39YCR093W QCR10P37299 77 aa0.6□□□□□ -2.31
CDC39YCR093W YNL200CP40165 246 aaKnown RBP0.6□□□□□ -2.31
CDC39YCR093W BRP1P53194 125 aa0.6□□□□□ -2.31
CDC39YCR093W PHS1P40857 217 aa0.6□□□□□ -2.31
CDC39YCR093W HSK3P69852 69 aa0.6□□□□□ -2.31
CDC39YCR093W YPL067CQ02754 198 aa0.6□□□□□ -2.31
CDC39YCR093W RPS1BP23248 255 aaKnown RBP0.6□□□□□ -2.31
CDC39YCR093W YGL149WP53116 101 aa0.6□□□□□ -2.31
CDC39YCR093W SMD2Q06217 110 aaKnown RBP0.6□□□□□ -2.31
CDC39YCR093W TAR1Q8TGM6 124 aa0.6□□□□□ -2.31
CDC39YCR093W YHR212W-AP0CX91 67 aa0.59□□□□□ -2.31
CDC39YCR093W YPR202WQ08993 238 aa0.59□□□□□ -2.31
CDC39YCR093W SLM6P38343 150 aa0.59□□□□□ -2.31
CDC39YCR093W PRM3Q08931 133 aa0.59□□□□□ -2.31
CDC39YCR093W URA2P07259 2214 aaKnown RBP0.59□□□□□ -2.32
CDC39YCR093W HUA1P40325 198 aa0.59□□□□□ -2.32
CDC39YCR093W FIT3Q08907 204 aa0.59□□□□□ -2.32
CDC39YCR093W OCA6Q12454 224 aa0.59□□□□□ -2.32
CDC39YCR093W MRS4P23500 304 aa0.59□□□□□ -2.32
CDC39YCR093W YCR099CP25657 155 aa0.58□□□□□ -2.32
CDC39YCR093W PRS3P38689 320 aaKnown RBP0.58□□□□□ -2.32
CDC39YCR093W LST8P41318 303 aa0.58□□□□□ -2.32
CDC39YCR093W HPA2Q06592 156 aa0.58□□□□□ -2.32
CDC39YCR093W CCW12Q12127 133 aa0.58□□□□□ -2.32
CDC39YCR093W DDR48P18899 430 aaKnown RBP0.58□□□□□ -2.32
CDC39YCR093W CPR5P35176 225 aa0.58□□□□□ -2.32
CDC39YCR093W PAU21P0CE86 164 aa0.58□□□□□ -2.32
CDC39YCR093W PAU22P0CE87 164 aa0.58□□□□□ -2.32
CDC39YCR093W YMR321CQ04898 105 aa0.58□□□□□ -2.32
CDC39YCR093W MRP49P32388 137 aa0.58□□□□□ -2.32
CDC39YCR093W RPL37AP49166 88 aaKnown RBP0.58□□□□□ -2.32
CDC39YCR093W RPL37BP51402 88 aaKnown RBP0.58□□□□□ -2.32
CDC39YCR093W YGR164WP53291 111 aa0.58□□□□□ -2.32
CDC39YCR093W COX19Q3E731 98 aa0.58□□□□□ -2.32
CDC39YCR093W YLR361C-AQ3E795 98 aa0.58□□□□□ -2.32
CDC39YCR093W SEC16P48415 2195 aaKnown RBP0.58□□□□□ -2.32
CDC39YCR093W SEC59P20048 519 aa0.58□□□□□ -2.32
CDC39YCR093W YLR363W-AQ3E747 85 aa0.58□□□□□ -2.32
CDC39YCR093W NHP2P32495 156 aaPredicted RBP0.57□□□□□ -2.32
CDC39YCR093W YJL218WP40892 196 aaKnown RBP0.57□□□□□ -2.32
CDC39YCR093W GTT2Q12390 233 aa0.57□□□□□ -2.32
CDC39YCR093W YPR203WQ08994 102 aa0.57□□□□□ -2.32
CDC39YCR093W CDC39P25655 2108 aaKnown RBP0.57□□□□□ -2.32
CDC39YCR093W MRP17P28778 131 aa0.57□□□□□ -2.32
CDC39YCR093W YEL008WP40001 126 aa0.57□□□□□ -2.32
CDC39YCR093W FYV4P38783 130 aaPredicted RBP0.56□□□□□ -2.32
CDC39YCR093W MVB12P42939 101 aa0.56□□□□□ -2.32
CDC39YCR093W RPL43AP0CX25 92 aaKnown RBP0.56□□□□□ -2.32
CDC39YCR093W RPL43BP0CX26 92 aa0.56□□□□□ -2.32
CDC39YCR093W SRB6P32570 121 aa0.56□□□□□ -2.32
CDC39YCR093W RPS1AP33442 255 aaKnown RBP0.56□□□□□ -2.32
CDC39YCR093W YGR240C-AQ3E786 66 aa0.56□□□□□ -2.32
CDC39YCR093W YBR072C-AQ3E794 53 aa0.56□□□□□ -2.32
CDC39YCR093W YKL068W-AQ3E826 78 aa0.56□□□□□ -2.32
CDC39YCR093W YGL014C-AP0C5N1 53 aa0.56□□□□□ -2.32
CDC39YCR093W SAE3P89114 91 aa0.56□□□□□ -2.32
CDC39YCR093W ATG8P38182 117 aaRIP-Chip data0.56□□□□□ -2.32not detected
CDC39YCR093W YJL197C-AP0C5P0 93 aa0.56□□□□□ -2.32
CDC39YCR093W AIM18P38884 321 aa0.56□□□□□ -2.32
CDC39YCR093W ERV14P53173 138 aa0.56□□□□□ -2.32
CDC39YCR093W RPB11P38902 120 aa0.55□□□□□ -2.32
CDC39YCR093W POR2P40478 281 aa0.55□□□□□ -2.32
CDC39YCR093W HPM1P40481 377 aa0.55□□□□□ -2.32
CDC39YCR093W YOR097CQ12274 175 aaPredicted RBP0.55□□□□□ -2.32
CDC39YCR093W RPL22BP56628 122 aaKnown RBP0.55□□□□□ -2.32
CDC39YCR093W ARL3Q02804 198 aa0.55□□□□□ -2.32
CDC39YCR093W YPL261CQ08976 102 aa0.55□□□□□ -2.32
CDC39YCR093W DAD1Q12248 94 aa0.55□□□□□ -2.32
CDC39YCR093W MEC1P38111 2368 aa0.55□□□□□ -2.32
CDC39YCR093W YLR118CQ12354 227 aa0.55□□□□□ -2.32
CDC39YCR093W YOL013W-AP0C272 63 aaPredicted RBP0.55□□□□□ -2.32
CDC39YCR093W HSP150P32478 413 aa0.55□□□□□ -2.32
CDC39YCR093W UTP20P35194 2493 aaKnown RBP0.55□□□□□ -2.32
CDC39YCR093W SNF11P38956 169 aa0.54□□□□□ -2.32
CDC39YCR093W RGI1P40043 161 aaPredicted RBP0.54□□□□□ -2.32
CDC39YCR093W SPC24Q04477 213 aa0.54□□□□□ -2.32
CDC39YCR093W COA4Q05809 96 aa0.54□□□□□ -2.32
CDC39YCR093W YOR385WQ08909 290 aa0.54□□□□□ -2.32
CDC39YCR093W SEN1Q00416 2231 aaKnown RBP0.54□□□□□ -2.32
CDC39YCR093W FAS1P07149 2051 aaKnown RBP0.54□□□□□ -2.32
CDC39YCR093W HHY1P39982 102 aa0.54□□□□□ -2.32
CDC39YCR093W YMR141CP40211 102 aa0.54□□□□□ -2.32
CDC39YCR093W EMP24P32803 203 aaKnown RBP0.54□□□□□ -2.32
CDC39YCR093W SNN1P48232 102 aa0.54□□□□□ -2.32
CDC39YCR093W YDR010CQ12426 110 aa0.54□□□□□ -2.32
CDC39YCR093W OST5Q92316 86 aa0.54□□□□□ -2.32
CDC39YCR093W RTC6O14464 93 aa0.54□□□□□ -2.32
CDC39YCR093W YCR050CP25630 102 aa0.54□□□□□ -2.32
CDC39YCR093W HUR1P45820 110 aa0.54□□□□□ -2.32
CDC39YCR093W YDL241WQ07738 123 aa0.54□□□□□ -2.32
CDC39YCR093W RPL22AP05749 121 aaKnown RBP0.54□□□□□ -2.32
CDC39YCR093W UTP11P34247 250 aaPredicted RBP0.53□□□□□ -2.32
Retrieved 100 of 5,963 RNA–protein pairs in 22.2 ms