RNA–Protein interactions for RNA: YBR228W

SLX1, Transcript of Endonuclease involved in DNA recombination and repair, yeast

Gene SLX1, Length 915 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SLX1	YBR228W	MRPL28	P36527	147 aa		2.96	□□□□□ -1.94
SLX1	YBR228W	RRT13	P40042	185 aa		2.96	□□□□□ -1.94
SLX1	YBR228W	WIP1	Q2V2P8	89 aa		2.96	□□□□□ -1.94
SLX1	YBR228W	PET8	P38921	284 aa		2.95	□□□□□ -1.94
SLX1	YBR228W	AIM34	Q03673	198 aa		2.95	□□□□□ -1.94
SLX1	YBR228W	YCR001W	P25347	104 aa		2.94	□□□□□ -1.94
SLX1	YBR228W	SSS1	P35179	80 aa		2.94	□□□□□ -1.94
SLX1	YBR228W	YRA2	P36036	203 aa	Known RBP RIP-Chip data	2.94	□□□□□ -1.94	not detected
SLX1	YBR228W	YNL200C	P40165	246 aa	Known RBP	2.94	□□□□□ -1.94
SLX1	YBR228W	YCH1	P42937	148 aa		2.94	□□□□□ -1.94
SLX1	YBR228W	IGD1	P43598	195 aa		2.94	□□□□□ -1.94
SLX1	YBR228W	TVP18	Q04767	167 aa		2.94	□□□□□ -1.94
SLX1	YBR228W	RDS3	Q06835	107 aa	Predicted RBP	2.94	□□□□□ -1.94
SLX1	YBR228W	YLR042C	Q07990	161 aa		2.94	□□□□□ -1.94
SLX1	YBR228W	YCR023C	P25351	611 aa		2.93	□□□□□ -1.94
SLX1	YBR228W	SCM4	P32564	187 aa		2.93	□□□□□ -1.94
SLX1	YBR228W	KTI12	P34253	313 aa	Known RBP	2.93	□□□□□ -1.94
SLX1	YBR228W	SEC72	P39742	193 aa	Known RBP	2.93	□□□□□ -1.94
SLX1	YBR228W	YER134C	P40081	178 aa		2.93	□□□□□ -1.94
SLX1	YBR228W	YAR1	P46683	200 aa		2.93	□□□□□ -1.94
SLX1	YBR228W	YGL118C	P53132	145 aa		2.93	□□□□□ -1.94
SLX1	YBR228W	SAE3	P89114	91 aa		2.93	□□□□□ -1.94
SLX1	YBR228W	CUE4	Q04201	117 aa	Predicted RBP	2.93	□□□□□ -1.94
SLX1	YBR228W	SEN15	Q04675	128 aa		2.93	□□□□□ -1.94
SLX1	YBR228W	VAM10	Q08474	114 aa		2.93	□□□□□ -1.94
SLX1	YBR228W	YCR075W-A	Q3E830	75 aa		2.93	□□□□□ -1.94
SLX1	YBR228W	SAL1	D6W196	494 aa		2.92	□□□□□ -1.94
SLX1	YBR228W	YOR304C-A	O14468	76 aa		2.92	□□□□□ -1.94
SLX1	YBR228W	MRPL44	P19956	98 aa		2.92	□□□□□ -1.94
SLX1	YBR228W	PRE1	P22141	198 aa	Known RBP	2.92	□□□□□ -1.94
SLX1	YBR228W	TEM1	P38987	245 aa		2.92	□□□□□ -1.94
SLX1	YBR228W	YER085C	P40058	173 aa		2.92	□□□□□ -1.94
SLX1	YBR228W	YNL217W	P40152	326 aa		2.92	□□□□□ -1.94
SLX1	YBR228W	OST3	P48439	350 aa		2.92	□□□□□ -1.94
SLX1	YBR228W	ERV14	P53173	138 aa		2.92	□□□□□ -1.94
SLX1	YBR228W	YIL014C-A	Q02598	104 aa		2.92	□□□□□ -1.94
SLX1	YBR228W	MGR2	Q02889	113 aa		2.92	□□□□□ -1.94
SLX1	YBR228W	SGF11	Q03067	99 aa		2.92	□□□□□ -1.94
SLX1	YBR228W	YPR014C	Q6B0W2	109 aa		2.92	□□□□□ -1.94
SLX1	YBR228W	PFY1	P07274	126 aa		2.91	□□□□□ -1.94
SLX1	YBR228W	YER076C	P40049	302 aa		2.91	□□□□□ -1.94
SLX1	YBR228W	DCV1	P43595	202 aa		2.91	□□□□□ -1.94
SLX1	YBR228W	YPL080C	Q02826	108 aa		2.91	□□□□□ -1.94
SLX1	YBR228W	DGA1	Q08650	418 aa		2.91	□□□□□ -1.94
SLX1	YBR228W	YPL257W	Q08974	193 aa		2.91	□□□□□ -1.94
SLX1	YBR228W	YIL134C-A	Q45U18	67 aa		2.91	□□□□□ -1.94
SLX1	YBR228W	CDC40	P40968	455 aa	Predicted RBP	2.9	□□□□□ -1.95
SLX1	YBR228W	YJL028W	P47062	111 aa		2.9	□□□□□ -1.95
SLX1	YBR228W	FCF1	Q05498	189 aa	Predicted RBP	2.9	□□□□□ -1.95
SLX1	YBR228W	YGR240C-A	Q3E786	66 aa		2.9	□□□□□ -1.95
SLX1	YBR228W	MDN1	Q12019	4910 aa	Known RBP	2.9	□□□□□ -1.95
SLX1	YBR228W	YKR070W	P36151	352 aa	Known RBP	2.89	□□□□□ -1.95
SLX1	YBR228W	MRPL11	P36521	249 aa	Predicted RBP	2.89	□□□□□ -1.95
SLX1	YBR228W	TOS6	P48560	102 aa		2.89	□□□□□ -1.95
SLX1	YBR228W	PMP3	P87284	55 aa		2.89	□□□□□ -1.95
SLX1	YBR228W	COA6	Q3E846	104 aa		2.89	□□□□□ -1.95
SLX1	YBR228W	UBC5	P15732	148 aa		2.88	□□□□□ -1.95
SLX1	YBR228W	RPL16A	P26784	199 aa	Known RBP	2.88	□□□□□ -1.95
SLX1	YBR228W	POP3	P53833	195 aa	Predicted RBP	2.88	□□□□□ -1.95
SLX1	YBR228W	YDR042C	Q03205	200 aa		2.88	□□□□□ -1.95
SLX1	YBR228W	DPP1	Q05521	289 aa		2.88	□□□□□ -1.95
SLX1	YBR228W	HTL1	Q9URQ5	78 aa		2.88	□□□□□ -1.95
SLX1	YBR228W	HMRA2	P0CY13	119 aa		2.87	□□□□□ -1.95
SLX1	YBR228W	PAU16	P35994	123 aa		2.87	□□□□□ -1.95
SLX1	YBR228W	FYV4	P38783	130 aa	Predicted RBP	2.87	□□□□□ -1.95
SLX1	YBR228W	GLC8	P41818	229 aa		2.87	□□□□□ -1.95
SLX1	YBR228W	YJR146W	P47174	117 aa		2.87	□□□□□ -1.95
SLX1	YBR228W	YLR361C-A	Q3E795	98 aa		2.87	□□□□□ -1.95
SLX1	YBR228W	COA3	Q3E7B2	85 aa		2.87	□□□□□ -1.95
SLX1	YBR228W	YOR008C-A	Q3E7B9	74 aa		2.87	□□□□□ -1.95
SLX1	YBR228W	RPL27B	P0C2H7	136 aa	Known RBP	2.86	□□□□□ -1.95
SLX1	YBR228W	RPL31A	P0C2H8	113 aa	Known RBP	2.86	□□□□□ -1.95
SLX1	YBR228W	FUN14	P18411	198 aa		2.86	□□□□□ -1.95
SLX1	YBR228W	MRP49	P32388	137 aa		2.86	□□□□□ -1.95
SLX1	YBR228W	YBR209W	P38311	105 aa		2.86	□□□□□ -1.95
SLX1	YBR228W	RPF1	P38805	295 aa	Known RBP	2.86	□□□□□ -1.95
SLX1	YBR228W	ARC15	P40518	154 aa	RIP-Chip data	2.86	□□□□□ -1.95	not detected
SLX1	YBR228W	YIL059C	P40520	121 aa		2.86	□□□□□ -1.95
SLX1	YBR228W	YGL088W	P53151	121 aa		2.86	□□□□□ -1.95
SLX1	YBR228W	YMR103C	Q04436	120 aa		2.86	□□□□□ -1.95
SLX1	YBR228W	CNL1	Q06333	122 aa		2.86	□□□□□ -1.95
SLX1	YBR228W	YMR122W-A	Q3E842	84 aa		2.86	□□□□□ -1.95
SLX1	YBR228W	APS1	P35181	156 aa		2.85	□□□□□ -1.95
SLX1	YBR228W	ERI1	P62651	68 aa	Known RBP	2.85	□□□□□ -1.95
SLX1	YBR228W	PKR1	Q03880	122 aa	Known RBP	2.85	□□□□□ -1.95
SLX1	YBR228W	YLR050C	Q12155	161 aa	Known RBP	2.85	□□□□□ -1.95
SLX1	YBR228W	SLO1	Q3E784	85 aa		2.85	□□□□□ -1.95
SLX1	YBR228W	SCS22	Q6Q595	175 aa		2.85	□□□□□ -1.95
SLX1	YBR228W	SEC11	P15367	167 aa		2.84	□□□□□ -1.95
SLX1	YBR228W	UGX2	P32772	223 aa		2.84	□□□□□ -1.95
SLX1	YBR228W	YKL070W	P36087	169 aa		2.84	□□□□□ -1.95
SLX1	YBR228W	YEL008W	P40001	126 aa		2.84	□□□□□ -1.95
SLX1	YBR228W	SPC1	P46965	94 aa		2.84	□□□□□ -1.95
SLX1	YBR228W	YNL184C	P53876	108 aa		2.84	□□□□□ -1.95
SLX1	YBR228W	YLL066W-B	Q8TGJ7	56 aa		2.84	□□□□□ -1.95
SLX1	YBR228W	RPL33A	P05744	107 aa	Known RBP	2.83	□□□□□ -1.96
SLX1	YBR228W	ATP15	P21306	62 aa		2.83	□□□□□ -1.96
SLX1	YBR228W	PEX22	P39718	180 aa		2.83	□□□□□ -1.96
SLX1	YBR228W	RPL33B	P41056	107 aa	Known RBP	2.83	□□□□□ -1.96
SLX1	YBR228W	YGL230C	P53074	147 aa		2.83	□□□□□ -1.96

Retrieved 100 of 5,963 RNA–protein pairs in 77.9 ms