RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 FBXW8Q8N3Y1 598 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 SMYD1Q8NB12 490 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 C7orf26Q96N11 449 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 DBR1Q9UK59 544 aaKnown RBP4.84□□□□□ -1.64
SCN1A-220ENST00000641603 MYO1DO94832 1006 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 LSM8O95777 96 aaKnown RBP4.84□□□□□ -1.64
SCN1A-220ENST00000641603 PRLP01236 227 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 DLATP10515 647 aaKnown RBP4.84□□□□□ -1.64
SCN1A-220ENST00000641603 SLC26A3P40879 764 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 ACTR2P61160 394 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 ERVK-9P63128 1117 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 OTUD4Q01804 1114 aaKnown RBP4.84□□□□□ -1.64
SCN1A-220ENST00000641603 CTDSPL2Q05D32 466 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 FAM83EQ2M2I3 478 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 MTX3Q5HYI7 312 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 GLYCTKQ8IVS8 523 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 PCDHGA10Q9Y5H3 936 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 DLC1Q96QB1 1528 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 PNMA6FA0A0J9YX94 578 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 SFI1A8K8P3 1242 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 STX11O75558 287 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 ANXA6P08133 673 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 MAPK1P28482 360 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 HIBADHP31937 336 aaKnown RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 GNL1P36915 607 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 GNG2P59768 71 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 COG2Q14746 738 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 PTPAQ15257 358 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 FAM98BQ52LJ0 330 aaKnown RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 PROSER2Q86WR7 435 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 DHFR2Q86XF0 187 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 LRRC17Q8N6Y2 441 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 SNIP1Q8TAD8 396 aaKnown RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 STARD8Q92502 1023 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 ATP6V1E2Q96A05 226 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 GPATCH1Q9BRR8 931 aaKnown RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 CLTCL1P53675 1640 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 SETD1BQ9UPS6 1966 aaKnown RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 SIN3BO75182 1162 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 IFNA14P01570 189 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 WEE2P0C1S8 567 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 ITGAXP20702 1163 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 CTSWP56202 376 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 HERVK_113P62684 666 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 IL1RL1Q01638 556 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 YWHAHQ04917 246 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 ITGADQ13349 1161 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 DMC1Q14565 340 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 MOGQ16653 247 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 MDH1BQ5I0G3 518 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 PDZK1Q5T2W1 519 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 CCDC28AQ8IWP9 274 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 C8orf59Q8N0T1 100 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 ZNF333Q96JL9 665 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 AGBL1Q96MI9 1066 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 AKAP7Q9P0M2 348 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 NAALADL1Q9UQQ1 740 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 USP20Q9Y2K6 914 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 STXBP5LQ9Y2K9 1186 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 PCDHB2Q9Y5E7 798 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 PEX16Q9Y5Y5 336 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 KIF1BO60333 1816 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 PLK4O00444 970 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 PABPC4LP0CB38 370 aaKnown RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 F8A1P23610 371 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 CCT3P49368 545 aaKnown RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 MAD2L1Q13257 205 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 ZNF423Q2M1K9 1284 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 CNPY1Q3B7I2 92 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 CLHC1Q8NHS4 586 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 POMGNT1Q8WZA1 660 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 SYNPO2Q9UMS6 1093 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 ALG6Q9Y672 507 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 ZMYM2Q9UBW7 1377 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 ISPDA4D126 451 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 SNAP23O00161 211 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 DDHD2O94830 711 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 KLRC1P26715 233 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 CASP2P42575 452 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 RRP1BQ14684 758 aaKnown RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 TMCO4Q5TGY1 634 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 KLHDC7AQ5VTJ3 777 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 CIAPIN1Q6FI81 312 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 FAM92BQ6ZTR7 304 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 C4orf33Q8N1A6 199 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 LARGE2Q8N3Y3 721 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 USHBP1Q8N6Y0 703 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 GRIP2Q9C0E4 1043 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 COMMD8Q9NX08 183 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 TK2O00142 265 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 SLC22A1O15245 554 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 SEC24AO95486 1093 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 ENO3P13929 434 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 SERPINB5P36952 375 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 PSMC6P62333 389 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 ECT2LQ008S8 904 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 KCNV1Q6PIU1 500 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 DNAAF5Q86Y56 855 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 TDRPQ86YL5 185 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 ZCCHC9Q8N567 271 aaKnown RBP4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms