RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.36□□□□□ -1.39
SCN1A-217ENST00000637988 NR2E1Q9Y466 385 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 NRKQ7Z2Y5 1582 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 URADA6NGE7 173 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 VSTM5A8MXK1 200 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 ADH1CP00326 375 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 IFNA14P01570 189 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 NOS3P29474 1203 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 ACOT2P49753 483 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 CAPRIN2Q6IMN6 1127 aaKnown RBP6.36□□□□□ -1.39
SCN1A-217ENST00000637988 ALKBH2Q6NS38 261 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 CYB5D1Q6P9G0 228 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 SYDE1Q6ZW31 735 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-217ENST00000637988 CPA6Q8N4T0 437 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 KCTD17Q8N5Z5 321 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 KCNB2Q92953 911 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 RBBP8Q99708 897 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 CCDC177Q9NQR7 707 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-217ENST00000637988 CYP39A1Q9NYL5 469 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 ADGRB3O60242 1522 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 A0A0G2JND7 137 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 H3BM21 787 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 PLEKHA8P1O95397 391 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 FTCDO95954 541 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 IGSF6O95976 241 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 ST13P50502 369 aaKnown RBP6.36□□□□□ -1.39
SCN1A-217ENST00000637988 FSCN1Q16658 493 aaKnown RBP6.36□□□□□ -1.39
SCN1A-217ENST00000637988 ATP13A4Q4VNC1 1196 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 FAM171A1Q5VUB5 890 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 FAM46CQ5VWP2 391 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 PRR5LQ6MZQ0 368 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 LVRNQ6Q4G3 990 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 ZMAT2Q96NC0 199 aaKnown RBP6.36□□□□□ -1.39
SCN1A-217ENST00000637988 HSPBP1Q9NZL4 362 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 PCDHB5Q9Y5E4 795 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 SRP72O76094 671 aaKnown RBP6.36□□□□□ -1.39
SCN1A-217ENST00000637988 FTLP02792 175 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-217ENST00000637988 RLBP1P12271 317 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 GSPT1P15170 499 aaKnown RBP6.36□□□□□ -1.39
SCN1A-217ENST00000637988 OAS2P29728 719 aaKnown RBP6.36□□□□□ -1.39
SCN1A-217ENST00000637988 RPS7P62081 194 aaKnown RBP6.36□□□□□ -1.39
SCN1A-217ENST00000637988 AP2B1P63010 937 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 ZNHIT3Q15649 155 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-217ENST00000637988 FAM83EQ2M2I3 478 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 FAAH2Q6GMR7 532 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 IFNL1Q8IU54 200 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 ST13P4Q8IZP2 240 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-217ENST00000637988 IL17RAQ96F46 866 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 ADGRL2O95490 1459 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 GNG14A0A1W2PPG7 69 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 ADCY6O43306 1168 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 ILF2Q12905 390 aaKnown RBP6.35□□□□□ -1.39
SCN1A-217ENST00000637988 CHADLQ6NUI6 762 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 FAM173BQ6P4H8 233 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 JAMLQ86YT9 394 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 TMEM159Q96B96 161 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 RNF25Q96BH1 459 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-217ENST00000637988 GPRASP2Q96D09 838 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 SHDQ96IW2 340 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 AGBL1Q96MI9 1066 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 TBCDQ9BTW9 1192 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 HPS4Q9NQG7 708 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 INTUQ9ULD6 942 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 WDR19Q8NEZ3 1342 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 SLC16A3O15427 465 aaKnown RBP6.35□□□□□ -1.39
SCN1A-217ENST00000637988 CA12O43570 354 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 CCDC22O60826 627 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 CCNB2O95067 398 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 GRK2P25098 689 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 CXCR5P32302 372 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 S100A5P33763 92 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 SLCO1A2P46721 670 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 RUNX1T1Q06455 604 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 USP33Q8TEY7 942 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 STAMBPL1Q96FJ0 436 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 RIPOR3Q96MK2 946 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 CNPY3Q9BT09 278 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 PITPNM3Q9BZ71 974 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 KLK14Q9P0G3 267 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 VTI1BQ9UEU0 232 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 STAP2Q9UGK3 403 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 MED14O60244 1454 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 CPS1P31327 1500 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 WWP2O00308 870 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 SLC25A12O75746 678 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 CSF1RP07333 972 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 TLX1P31314 330 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-217ENST00000637988 NEK2P51955 445 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 DRAP1Q14919 205 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-217ENST00000637988 RARS2Q5T160 578 aaKnown RBP6.35□□□□□ -1.39
SCN1A-217ENST00000637988 ESRP1Q6NXG1 681 aaKnown RBP6.35□□□□□ -1.39
SCN1A-217ENST00000637988 MCEMP1Q8IX19 187 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 DNERQ8NFT8 737 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 BLOC1S5Q8TDH9 187 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 INTS2Q9H0H0 1204 aaKnown RBP6.35□□□□□ -1.39
SCN1A-217ENST00000637988 ZFYVE1Q9HBF4 777 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 VTA1Q9NP79 307 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 PIH1D3Q9NQM4 214 aaKnown RBP6.35□□□□□ -1.39
SCN1A-217ENST00000637988 SAMSN1Q9NSI8 373 aaKnown RBP6.35□□□□□ -1.39
SCN1A-217ENST00000637988 TTC7AQ9ULT0 858 aaPredicted RBP6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms