RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 MRPS31Q92665 395 aaKnown RBP19.38■□□□□ 0.69
CLN3-259ENST00000637551 TATDN2Q93075 761 aa19.38■□□□□ 0.69
CLN3-259ENST00000637551 CYFIP2Q96F07 1278 aa19.38■□□□□ 0.69
CLN3-259ENST00000637551 INTS2Q9H0H0 1204 aaKnown RBP19.38■□□□□ 0.69
CLN3-259ENST00000637551 FBXO44Q9H4M3 255 aa19.38■□□□□ 0.69
CLN3-259ENST00000637551 KIF9Q9HAQ2 790 aa19.38■□□□□ 0.69
CLN3-259ENST00000637551 ZNF334Q9HCZ1 680 aaPredicted RBP19.38■□□□□ 0.69
CLN3-259ENST00000637551 KRT82Q9NSB4 513 aa19.38■□□□□ 0.69
CLN3-259ENST00000637551 APEX2Q9UBZ4 518 aa19.38■□□□□ 0.69
CLN3-259ENST00000637551 KIF26AQ9ULI4 1882 aaPredicted RBP19.37■□□□□ 0.69
CLN3-259ENST00000637551 A0A1W2PRU2 124 aa19.37■□□□□ 0.69
CLN3-259ENST00000637551 LRRC10BA6NIK2 292 aa19.37■□□□□ 0.69
CLN3-259ENST00000637551 LRRN2O75325 713 aa19.37■□□□□ 0.69
CLN3-259ENST00000637551 SRFP11831 508 aa19.37■□□□□ 0.69
CLN3-259ENST00000637551 CD58P19256 250 aa19.37■□□□□ 0.69
CLN3-259ENST00000637551 SLC8A3P57103 927 aa19.37■□□□□ 0.69
CLN3-259ENST00000637551 ZNF268Q14587 947 aaPredicted RBP19.37■□□□□ 0.69
CLN3-259ENST00000637551 CCDC142Q17RM4 750 aa19.37■□□□□ 0.69
CLN3-259ENST00000637551 MIIPQ5JXC2 388 aa19.37■□□□□ 0.69
CLN3-259ENST00000637551 IER5LQ5T953 404 aa19.37■□□□□ 0.69
CLN3-259ENST00000637551 BMP8AQ7Z5Y6 402 aa19.37■□□□□ 0.69
CLN3-259ENST00000637551 SCN4BQ8IWT1 228 aa19.37■□□□□ 0.69
CLN3-259ENST00000637551 NUP93Q8N1F7 819 aa19.37■□□□□ 0.69
CLN3-259ENST00000637551 SLC2A14Q8TDB8 520 aa19.37■□□□□ 0.69
CLN3-259ENST00000637551 TCEAL4Q96EI5 215 aa19.37■□□□□ 0.69
CLN3-259ENST00000637551 SLITRK1Q96PX8 696 aa19.37■□□□□ 0.69
CLN3-259ENST00000637551 TWNKQ96RR1 684 aa19.37■□□□□ 0.69
CLN3-259ENST00000637551 ARID3AQ99856 593 aa19.37■□□□□ 0.69
CLN3-259ENST00000637551 ATXN3LQ9H3M9 355 aa19.37■□□□□ 0.69
CLN3-259ENST00000637551 ZFP14Q9HCL3 533 aa19.37■□□□□ 0.69
CLN3-259ENST00000637551 TRPV5Q9NQA5 729 aa19.37■□□□□ 0.69
CLN3-259ENST00000637551 CACNA1AO00555 2505 aa19.36■□□□□ 0.69
CLN3-259ENST00000637551 AP1G2O75843 785 aa19.36■□□□□ 0.69
CLN3-259ENST00000637551 TCF3P15923 654 aa19.36■□□□□ 0.69
CLN3-259ENST00000637551 NPR3P17342 541 aa19.36■□□□□ 0.69
CLN3-259ENST00000637551 ACO1P21399 889 aaKnown RBP19.36■□□□□ 0.69
CLN3-259ENST00000637551 SP100P23497 879 aaPredicted RBP19.36■□□□□ 0.69
CLN3-259ENST00000637551 TUBP50607 506 aa19.36■□□□□ 0.69
CLN3-259ENST00000637551 ZNF132P52740 706 aa19.36■□□□□ 0.69
CLN3-259ENST00000637551 MFAP3P55082 362 aa19.36■□□□□ 0.69
CLN3-259ENST00000637551 PFKPQ01813 784 aa19.36■□□□□ 0.69
CLN3-259ENST00000637551 SNX30Q5VWJ9 437 aa19.36■□□□□ 0.69
CLN3-259ENST00000637551 TMEM150AQ86TG1 271 aa19.36■□□□□ 0.69
CLN3-259ENST00000637551 MON1AQ86VX9 555 aa19.36■□□□□ 0.69
CLN3-259ENST00000637551 SLC44A3Q8N4M1 653 aa19.36■□□□□ 0.69
CLN3-259ENST00000637551 GIPC2Q8TF65 315 aa19.36■□□□□ 0.69
CLN3-259ENST00000637551 MED10Q9BTT4 135 aa19.36■□□□□ 0.69
CLN3-259ENST00000637551 NUMBLQ9Y6R0 609 aa19.36■□□□□ 0.69
CLN3-259ENST00000637551 ZFHX2Q9C0A1 2572 aaPredicted RBP19.35■□□□□ 0.69
CLN3-259ENST00000637551 TNFRSF10BO14763 440 aa19.35■□□□□ 0.69
CLN3-259ENST00000637551 VDRP11473 427 aa19.35■□□□□ 0.69
CLN3-259ENST00000637551 ZNF18P17022 549 aa19.35■□□□□ 0.69
CLN3-259ENST00000637551 FCARP24071 287 aa19.35■□□□□ 0.69
CLN3-259ENST00000637551 TEAD2Q15562 447 aa19.35■□□□□ 0.69
CLN3-259ENST00000637551 SGO2Q562F6 1265 aa19.35■□□□□ 0.69
CLN3-259ENST00000637551 CLEC20AQ6ZU45 233 aa19.35■□□□□ 0.69
CLN3-259ENST00000637551 C11orf57Q6ZUT1 292 aaPredicted RBP19.35■□□□□ 0.69
CLN3-259ENST00000637551 ANKRD52Q8NB46 1076 aa19.35■□□□□ 0.69
CLN3-259ENST00000637551 ZSCAN18Q8TBC5 510 aaPredicted RBP19.35■□□□□ 0.69
CLN3-259ENST00000637551 DNASE1L2Q92874 299 aa19.35■□□□□ 0.69
CLN3-259ENST00000637551 FGF14Q92915 247 aa19.35■□□□□ 0.69
CLN3-259ENST00000637551 PRRX2Q99811 253 aa19.35■□□□□ 0.69
CLN3-259ENST00000637551 FUCA2Q9BTY2 467 aa19.35■□□□□ 0.69
CLN3-259ENST00000637551 DUSP16Q9BY84 665 aa19.35■□□□□ 0.69
CLN3-259ENST00000637551 SLITRK6Q9H5Y7 841 aa19.35■□□□□ 0.69
CLN3-259ENST00000637551 SAMSN1Q9NSI8 373 aaKnown RBP19.35■□□□□ 0.69
CLN3-259ENST00000637551 WNT16Q9UBV4 365 aa19.35■□□□□ 0.69
CLN3-259ENST00000637551 HELZP42694 1942 aaKnown RBP19.35■□□□□ 0.69
CLN3-259ENST00000637551 SPTBN4Q9H254 2564 aa19.35■□□□□ 0.69
CLN3-259ENST00000637551 SMTNL1A8MU46 457 aa19.34■□□□□ 0.69
CLN3-259ENST00000637551 CCDC130P13994 396 aa19.34■□□□□ 0.69
CLN3-259ENST00000637551 PON1P27169 355 aa19.34■□□□□ 0.69
CLN3-259ENST00000637551 GPR15P49685 360 aa19.34■□□□□ 0.69
CLN3-259ENST00000637551 BCAT1P54687 386 aa19.34■□□□□ 0.69
CLN3-259ENST00000637551 MLLT6P55198 1093 aaPredicted RBP19.34■□□□□ 0.69
CLN3-259ENST00000637551 FCHO2Q0JRZ9 810 aa19.34■□□□□ 0.69
CLN3-259ENST00000637551 TCF15Q12870 199 aa19.34■□□□□ 0.69
CLN3-259ENST00000637551 FAM78AQ5JUQ0 283 aa19.34■□□□□ 0.69
CLN3-259ENST00000637551 PARM1Q6UWI2 310 aa19.34■□□□□ 0.69
CLN3-259ENST00000637551 TRIM67Q6ZTA4 783 aa19.34■□□□□ 0.69
CLN3-259ENST00000637551 CMTM8Q8IZV2 173 aa19.34■□□□□ 0.69
CLN3-259ENST00000637551 ZNF276Q8N554 614 aa19.34■□□□□ 0.69
CLN3-259ENST00000637551 C12orf29Q8N999 325 aa19.34■□□□□ 0.69
CLN3-259ENST00000637551 ING5Q8WYH8 240 aa19.34■□□□□ 0.69
CLN3-259ENST00000637551 MCRS1Q96EZ8 462 aa19.34■□□□□ 0.69
CLN3-259ENST00000637551 HEXIM2Q96MH2 286 aaKnown RBP19.34■□□□□ 0.69
CLN3-259ENST00000637551 TMEM30AQ9NV96 361 aa19.34■□□□□ 0.69
CLN3-259ENST00000637551 TRPM5Q9NZQ8 1165 aa19.34■□□□□ 0.69
CLN3-259ENST00000637551 LIMA1Q9UHB6 759 aaKnown RBP19.34■□□□□ 0.69
CLN3-259ENST00000637551 CLDN5O00501 218 aa19.33■□□□□ 0.68
CLN3-259ENST00000637551 TADA3O75528 432 aa19.33■□□□□ 0.68
CLN3-259ENST00000637551 ASGR2P07307 311 aa19.33■□□□□ 0.68
CLN3-259ENST00000637551 SETSIPP0DME0 302 aa19.33■□□□□ 0.68
CLN3-259ENST00000637551 YWHAQP27348 245 aa19.33■□□□□ 0.68
CLN3-259ENST00000637551 AVPR1AP37288 418 aa19.33■□□□□ 0.68
CLN3-259ENST00000637551 PSEN1P49768 467 aa19.33■□□□□ 0.68
CLN3-259ENST00000637551 SLC5A3P53794 718 aa19.33■□□□□ 0.68
CLN3-259ENST00000637551 NCAPHQ15003 741 aa19.33■□□□□ 0.68
CLN3-259ENST00000637551 GPR158Q5T848 1215 aa19.33■□□□□ 0.68
CLN3-259ENST00000637551 PPP1R26Q5T8A7 1209 aaPredicted RBP19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms