RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 SLC39A14Q15043 492 aa19.09■□□□□ 0.65
CIITA-215ENST00000637439 USP39Q53GS9 565 aaKnown RBP19.09■□□□□ 0.65
CIITA-215ENST00000637439 LMBRD2Q68DH5 695 aaPredicted RBP19.09■□□□□ 0.65
CIITA-215ENST00000637439 WDR49Q8IV35 697 aa19.09■□□□□ 0.65
CIITA-215ENST00000637439 OR5B17Q8NGF7 314 aa19.09■□□□□ 0.65
CIITA-215ENST00000637439 FAM84AQ96KN4 292 aa19.09■□□□□ 0.65
CIITA-215ENST00000637439 MMS19Q96T76 1030 aa19.09■□□□□ 0.65
CIITA-215ENST00000637439 TTLL2Q9BWV7 592 aa19.09■□□□□ 0.65
CIITA-215ENST00000637439 PANK2Q9BZ23 570 aa19.09■□□□□ 0.65
CIITA-215ENST00000637439 LINC00597Q9H2U6 94 aa19.09■□□□□ 0.65
CIITA-215ENST00000637439 SMOC1Q9H4F8 434 aa19.09■□□□□ 0.65
CIITA-215ENST00000637439 CRTAC1Q9NQ79 661 aa19.09■□□□□ 0.65
CIITA-215ENST00000637439 BCLAF3A2AJT9 711 aaKnown RBP19.08■□□□□ 0.64
CIITA-215ENST00000637439 LEFTY2O00292 366 aa19.08■□□□□ 0.64
CIITA-215ENST00000637439 FAM163BP0C2L3 166 aa19.08■□□□□ 0.64
CIITA-215ENST00000637439 SYT1P21579 422 aa19.08■□□□□ 0.64
CIITA-215ENST00000637439 GBP1P32455 592 aa19.08■□□□□ 0.64
CIITA-215ENST00000637439 MYCBPAPQ8TBZ2 947 aa19.08■□□□□ 0.64
CIITA-215ENST00000637439 USP33Q8TEY7 942 aa19.08■□□□□ 0.64
CIITA-215ENST00000637439 HSPBP1Q9NZL4 362 aa19.08■□□□□ 0.64
CIITA-215ENST00000637439 PTPRJQ12913 1337 aa19.07■□□□□ 0.64
CIITA-215ENST00000637439 A0A087X0B3 334 aa19.07■□□□□ 0.64
CIITA-215ENST00000637439 SLC9A3R1O14745 358 aaPredicted RBP19.07■□□□□ 0.64
CIITA-215ENST00000637439 DCLK1O15075 740 aa19.07■□□□□ 0.64
CIITA-215ENST00000637439 KCNK5O95279 499 aa19.07■□□□□ 0.64
CIITA-215ENST00000637439 PDGFRBP09619 1106 aa19.07■□□□□ 0.64
CIITA-215ENST00000637439 OPRD1P41143 372 aa19.07■□□□□ 0.64
CIITA-215ENST00000637439 NOP14P78316 857 aaKnown RBP19.07■□□□□ 0.64
CIITA-215ENST00000637439 SLC7A9P82251 487 aa19.07■□□□□ 0.64
CIITA-215ENST00000637439 FAM173BQ6P4H8 233 aa19.07■□□□□ 0.64
CIITA-215ENST00000637439 CBWD2Q8IUF1 395 aa19.07■□□□□ 0.64
CIITA-215ENST00000637439 PCED1BQ96HM7 432 aa19.07■□□□□ 0.64
CIITA-215ENST00000637439 C8orf48Q96LL4 319 aa19.07■□□□□ 0.64
CIITA-215ENST00000637439 EDEM2Q9BV94 578 aa19.07■□□□□ 0.64
CIITA-215ENST00000637439 TNMDQ9H2S6 317 aa19.07■□□□□ 0.64
CIITA-215ENST00000637439 SNX25Q9H3E2 840 aa19.07■□□□□ 0.64
CIITA-215ENST00000637439 MMP17Q9ULZ9 603 aa19.07■□□□□ 0.64
CIITA-215ENST00000637439 LAMA1P25391 3075 aa19.07■□□□□ 0.64
CIITA-215ENST00000637439 PTPRDP23468 1912 aa19.06■□□□□ 0.64
CIITA-215ENST00000637439 ZNF840PA6NDX5 716 aa19.06■□□□□ 0.64
CIITA-215ENST00000637439 K7EQS6 105 aa19.06■□□□□ 0.64
CIITA-215ENST00000637439 EIF3DO15371 548 aaKnown RBP eCLIP19.06■□□□□ 0.64
CIITA-215ENST00000637439 TACC1O75410 805 aa19.06■□□□□ 0.64
CIITA-215ENST00000637439 GNL1P36915 607 aaPredicted RBP19.06■□□□□ 0.64
CIITA-215ENST00000637439 USP46P62068 366 aa19.06■□□□□ 0.64
CIITA-215ENST00000637439 MRPS21P82921 87 aaKnown RBP19.06■□□□□ 0.64
CIITA-215ENST00000637439 AMPD3Q01432 767 aa19.06■□□□□ 0.64
CIITA-215ENST00000637439 C2orf27AQ580R0 203 aa19.06■□□□□ 0.64
CIITA-215ENST00000637439 DAB2IPQ5VWQ8 1189 aa19.06■□□□□ 0.64
CIITA-215ENST00000637439 PMS2CLQ68D20 193 aa19.06■□□□□ 0.64
CIITA-215ENST00000637439 TCEAL6Q6IPX3 200 aa19.06■□□□□ 0.64
CIITA-215ENST00000637439 TRAPPC11Q7Z392 1133 aa19.06■□□□□ 0.64
CIITA-215ENST00000637439 RASSF3Q86WH2 238 aa19.06■□□□□ 0.64
CIITA-215ENST00000637439 PDILTQ8N807 584 aa19.06■□□□□ 0.64
CIITA-215ENST00000637439 TCEAL3Q969E4 200 aa19.06■□□□□ 0.64
CIITA-215ENST00000637439 CNOT6LQ96LI5 555 aaKnown RBP19.06■□□□□ 0.64
CIITA-215ENST00000637439 USP28Q96RU2 1077 aa19.06■□□□□ 0.64
CIITA-215ENST00000637439 CUEDC2Q9H467 287 aa19.06■□□□□ 0.64
CIITA-215ENST00000637439 ZSCAN16Q9H4T2 348 aaPredicted RBP19.06■□□□□ 0.64
CIITA-215ENST00000637439 ALDH1A2O94788 518 aa19.05■□□□□ 0.64
CIITA-215ENST00000637439 TNNI1P19237 187 aa19.05■□□□□ 0.64
CIITA-215ENST00000637439 EIF2DP41214 584 aaKnown RBP19.05■□□□□ 0.64
CIITA-215ENST00000637439 SEC13P55735 322 aa19.05■□□□□ 0.64
CIITA-215ENST00000637439 HSF5Q4G112 596 aaPredicted RBP19.05■□□□□ 0.64
CIITA-215ENST00000637439 MDH1BQ5I0G3 518 aa19.05■□□□□ 0.64
CIITA-215ENST00000637439 TDRD10Q5VZ19 366 aaKnown RBP19.05■□□□□ 0.64
CIITA-215ENST00000637439 HS2ST1Q7LGA3 356 aa19.05■□□□□ 0.64
CIITA-215ENST00000637439 FILIP1Q7Z7B0 1213 aa19.05■□□□□ 0.64
CIITA-215ENST00000637439 DDX42Q86XP3 938 aaKnown RBP eCLIP19.05■□□□□ 0.64
CIITA-215ENST00000637439 ADGRG2Q8IZP9 1017 aa19.05■□□□□ 0.64
CIITA-215ENST00000637439 SLITRK1Q96PX8 696 aa19.05■□□□□ 0.64
CIITA-215ENST00000637439 FNBP1Q96RU3 617 aa19.05■□□□□ 0.64
CIITA-215ENST00000637439 USP24Q9UPU5 2620 aa19.05■□□□□ 0.64
CIITA-215ENST00000637439 F8VP50 259 aa19.04■□□□□ 0.64
CIITA-215ENST00000637439 KHNYNO15037 678 aaKnown RBP19.04■□□□□ 0.64
CIITA-215ENST00000637439 OLFM2O95897 454 aa19.04■□□□□ 0.64
CIITA-215ENST00000637439 ABL1P00519 1130 aa19.04■□□□□ 0.64
CIITA-215ENST00000637439 CYP17A1P05093 508 aa19.04■□□□□ 0.64
CIITA-215ENST00000637439 DLATP10515 647 aaKnown RBP19.04■□□□□ 0.64
CIITA-215ENST00000637439 SNRPFP62306 86 aaKnown RBP19.04■□□□□ 0.64
CIITA-215ENST00000637439 TNNC1P63316 161 aa19.04■□□□□ 0.64
CIITA-215ENST00000637439 ZXDBP98169 803 aa19.04■□□□□ 0.64
CIITA-215ENST00000637439 CRY1Q16526 586 aa19.04■□□□□ 0.64
CIITA-215ENST00000637439 SNRNP35Q16560 246 aaKnown RBP19.04■□□□□ 0.64
CIITA-215ENST00000637439 ANO7Q6IWH7 933 aa19.04■□□□□ 0.64
CIITA-215ENST00000637439 PSAPL1Q6NUJ1 521 aa19.04■□□□□ 0.64
CIITA-215ENST00000637439 OR6B3Q8NGW1 331 aa19.04■□□□□ 0.64
CIITA-215ENST00000637439 ZNF507Q8TCN5 953 aa19.04■□□□□ 0.64
CIITA-215ENST00000637439 PNKPQ96T60 521 aa19.04■□□□□ 0.64
CIITA-215ENST00000637439 TPSD1Q9BZJ3 242 aa19.04■□□□□ 0.64
CIITA-215ENST00000637439 TRIM9Q9C026 710 aa19.04■□□□□ 0.64
CIITA-215ENST00000637439 ELOVL4Q9GZR5 314 aa19.04■□□□□ 0.64
CIITA-215ENST00000637439 RNF38Q9H0F5 515 aa19.04■□□□□ 0.64
CIITA-215ENST00000637439 KBTBD4Q9NVX7 518 aa19.04■□□□□ 0.64
CIITA-215ENST00000637439 CPQQ9Y646 472 aa19.04■□□□□ 0.64
CIITA-215ENST00000637439 NUP205Q92621 2012 aa19.03■□□□□ 0.64
CIITA-215ENST00000637439 LNP1A1A4G5 178 aa19.03■□□□□ 0.64
CIITA-215ENST00000637439 C4orf47A7E2U8 309 aa19.03■□□□□ 0.64
CIITA-215ENST00000637439 ADH1CP00326 375 aa19.03■□□□□ 0.64
CIITA-215ENST00000637439 OAS1P00973 400 aaKnown RBP19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms