RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 MAGOHP61326 146 aaKnown RBP16.43■□□□□ 0.22
CLN3-251ENST00000636853 CDO1Q16878 200 aa16.43■□□□□ 0.22
CLN3-251ENST00000636853 IZUMO3Q5VZ72 239 aa16.43■□□□□ 0.22
CLN3-251ENST00000636853 KBTBD7Q8WVZ9 684 aa16.43■□□□□ 0.22
CLN3-251ENST00000636853 TRIB2Q92519 343 aa16.43■□□□□ 0.22
CLN3-251ENST00000636853 PEBP4Q96S96 227 aa16.43■□□□□ 0.22
CLN3-251ENST00000636853 EIF3HO15372 352 aaKnown RBP eCLIP16.42■□□□□ 0.22
CLN3-251ENST00000636853 CST8O60676 142 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 TRUB2O95900 331 aaKnown RBP16.42■□□□□ 0.22
CLN3-251ENST00000636853 CCDC130P13994 396 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 KCNE1P15382 129 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 CORO7P57737 925 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 PLCB3Q01970 1234 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 SREBF2Q12772 1141 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 P3H1Q32P28 736 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 NBPF20Q3BBV1 942 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 XKR4Q5GH76 650 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 EMC10Q5UCC4 262 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 DRICH1Q6PGQ1 229 aaPredicted RBP16.42■□□□□ 0.22
CLN3-251ENST00000636853 HOOK3Q86VS8 718 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 SCUBE3Q8IX30 993 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 KCTD6Q8NC69 237 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 SLC35F5Q8WV83 523 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 ASNSD1Q9NWL6 643 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 GABBR2O75899 941 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 ACSL3O95573 720 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 CPP00450 1065 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 VCPP55072 806 aaKnown RBP16.42■□□□□ 0.22
CLN3-251ENST00000636853 LMNB2Q03252 620 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 TRIM32Q13049 653 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 OASLQ15646 514 aaKnown RBP16.42■□□□□ 0.22
CLN3-251ENST00000636853 ALLCQ8N6M5 410 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 PPM1EQ8WY54 764 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 WNT8BQ93098 351 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 ZFP42Q96MM3 310 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 CNPY3Q9BT09 278 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 MTG1Q9BT17 334 aaPredicted RBP16.42■□□□□ 0.22
CLN3-251ENST00000636853 TMEM121Q9BTD3 319 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 B3GNT5Q9BYG0 378 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 MIS12Q9H081 205 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 FAM107BQ9H098 131 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 C10orf88Q9H8K7 445 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 HESX1Q9UBX0 185 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 CDY2AQ9Y6F7 541 aa16.42■□□□□ 0.22
CLN3-251ENST00000636853 CTSHP09668 335 aa16.41■□□□□ 0.22
CLN3-251ENST00000636853 CYBAP13498 195 aa16.41■□□□□ 0.22
CLN3-251ENST00000636853 ADORA2BP29275 332 aa16.41■□□□□ 0.22
CLN3-251ENST00000636853 GNL1P36915 607 aaPredicted RBP16.41■□□□□ 0.22
CLN3-251ENST00000636853 SLCO1A2P46721 670 aa16.41■□□□□ 0.22
CLN3-251ENST00000636853 ARSEP51690 589 aa16.41■□□□□ 0.22
CLN3-251ENST00000636853 ATP11AP98196 1134 aa16.41■□□□□ 0.22
CLN3-251ENST00000636853 CAV1Q03135 178 aa16.41■□□□□ 0.22
CLN3-251ENST00000636853 ACAP1Q15027 740 aa16.41■□□□□ 0.22
CLN3-251ENST00000636853 FAM47CQ5HY64 1035 aa16.41■□□□□ 0.22
CLN3-251ENST00000636853 GDF6Q6KF10 455 aaPredicted RBP16.41■□□□□ 0.22
CLN3-251ENST00000636853 TAF2Q6P1X5 1199 aa16.41■□□□□ 0.22
CLN3-251ENST00000636853 OLFML1Q6UWY5 402 aa16.41■□□□□ 0.22
CLN3-251ENST00000636853 UNC93AQ86WB7 457 aa16.41■□□□□ 0.22
CLN3-251ENST00000636853 EPS8L3Q8TE67 593 aaKnown RBP16.41■□□□□ 0.22
CLN3-251ENST00000636853 CFAP57Q96MR6 1250 aa16.41■□□□□ 0.22
CLN3-251ENST00000636853 SLC4A5Q9BY07 1137 aa16.41■□□□□ 0.22
CLN3-251ENST00000636853 ABT1Q9ULW3 272 aaKnown RBP16.41■□□□□ 0.22
CLN3-251ENST00000636853 TLL2Q9Y6L7 1015 aa16.41■□□□□ 0.22
CLN3-251ENST00000636853 MEIS3P2A8K0S8 358 aa16.4■□□□□ 0.22
CLN3-251ENST00000636853 XPOTO43592 962 aaKnown RBP16.4■□□□□ 0.22
CLN3-251ENST00000636853 TAF6P49848 677 aa16.4■□□□□ 0.22
CLN3-251ENST00000636853 GJA9P57773 515 aa16.4■□□□□ 0.22
CLN3-251ENST00000636853 MRPS6P82932 125 aaKnown RBP16.4■□□□□ 0.22
CLN3-251ENST00000636853 OTUD4Q01804 1114 aaKnown RBP16.4■□□□□ 0.22
CLN3-251ENST00000636853 ICE2Q659A1 982 aa16.4■□□□□ 0.22
CLN3-251ENST00000636853 TRMT10CQ7L0Y3 403 aaKnown RBP16.4■□□□□ 0.22
CLN3-251ENST00000636853 CMASQ8NFW8 434 aaPredicted RBP16.4■□□□□ 0.22
CLN3-251ENST00000636853 ACTL9Q8TC94 416 aa16.4■□□□□ 0.22
CLN3-251ENST00000636853 ZNF560Q96MR9 790 aa16.4■□□□□ 0.22
CLN3-251ENST00000636853 CALN1Q9BXU9 219 aa16.4■□□□□ 0.22
CLN3-251ENST00000636853 CACNG4Q9UBN1 327 aa16.4■□□□□ 0.22
CLN3-251ENST00000636853 GTF2IRD1Q9UHL9 959 aa16.4■□□□□ 0.22
CLN3-251ENST00000636853 DRG1Q9Y295 367 aaKnown RBP16.4■□□□□ 0.22
CLN3-251ENST00000636853 SGK1O00141 431 aa16.4■□□□□ 0.22
CLN3-251ENST00000636853 PAPSS1O43252 624 aaPredicted RBP16.4■□□□□ 0.22
CLN3-251ENST00000636853 CA12O43570 354 aa16.4■□□□□ 0.22
CLN3-251ENST00000636853 MYCNP04198 464 aaPredicted RBP16.4■□□□□ 0.22
CLN3-251ENST00000636853 IGFBP6P24592 240 aaPredicted RBP16.4■□□□□ 0.22
CLN3-251ENST00000636853 MDH1P40925 334 aaKnown RBP16.4■□□□□ 0.22
CLN3-251ENST00000636853 FLT3LGP49771 235 aa16.4■□□□□ 0.22
CLN3-251ENST00000636853 CDR1P51861 262 aa16.4■□□□□ 0.22
CLN3-251ENST00000636853 MMRN1Q13201 1228 aa16.4■□□□□ 0.22
CLN3-251ENST00000636853 TAZQ16635 292 aa16.4■□□□□ 0.22
CLN3-251ENST00000636853 CCDC14Q49A88 953 aa16.4■□□□□ 0.22
CLN3-251ENST00000636853 CYP4V2Q6ZWL3 525 aaPredicted RBP16.4■□□□□ 0.22
CLN3-251ENST00000636853 TMEM110Q86TL2 294 aa16.4■□□□□ 0.22
CLN3-251ENST00000636853 RFX6Q8HWS3 928 aa16.4■□□□□ 0.22
CLN3-251ENST00000636853 APPL2Q8NEU8 664 aa16.4■□□□□ 0.22
CLN3-251ENST00000636853 SLC35B2Q8TB61 432 aa16.4■□□□□ 0.22
CLN3-251ENST00000636853 NKD2Q969F2 451 aaPredicted RBP16.4■□□□□ 0.22
CLN3-251ENST00000636853 ADAM7Q9H2U9 754 aa16.4■□□□□ 0.22
CLN3-251ENST00000636853 SNX25Q9H3E2 840 aa16.4■□□□□ 0.22
CLN3-251ENST00000636853 GDAP2Q9NXN4 497 aa16.4■□□□□ 0.22
CLN3-251ENST00000636853 SCN10AQ9Y5Y9 1956 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 M0QZ92 97 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 110.9 ms