RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ZPBP2Q6X784 338 aa15.66■□□□□ 0.1
CLN3-249ENST00000636685 FILIP1Q7Z7B0 1213 aa15.66■□□□□ 0.1
CLN3-249ENST00000636685 LURAP1LQ8IV03 231 aa15.66■□□□□ 0.1
CLN3-249ENST00000636685 FAM212AQ96EL1 285 aa15.66■□□□□ 0.1
CLN3-249ENST00000636685 TRMT2BQ96GJ1 504 aaKnown RBP15.66■□□□□ 0.1
CLN3-249ENST00000636685 DRC1Q96MC2 740 aa15.66■□□□□ 0.1
CLN3-249ENST00000636685 PRDM16Q9HAZ2 1276 aa15.66■□□□□ 0.1
CLN3-249ENST00000636685 IL21RQ9HBE5 538 aa15.66■□□□□ 0.1
CLN3-249ENST00000636685 ARHGEF4Q9NR80 690 aa15.66■□□□□ 0.1
CLN3-249ENST00000636685 DDX19AQ9NUU7 478 aaKnown RBP15.66■□□□□ 0.1
CLN3-249ENST00000636685 ARHGAP26Q9UNA1 814 aa15.66■□□□□ 0.1
CLN3-249ENST00000636685 CYP8B1Q9UNU6 501 aa15.66■□□□□ 0.1
CLN3-249ENST00000636685 E9PMD0 336 aa15.65■□□□□ 0.1
CLN3-249ENST00000636685 LEFTY2O00292 366 aa15.65■□□□□ 0.1
CLN3-249ENST00000636685 DKK1O94907 266 aa15.65■□□□□ 0.1
CLN3-249ENST00000636685 MAPTP10636 758 aaKnown RBP15.65■□□□□ 0.1
CLN3-249ENST00000636685 FDPSP14324 419 aaKnown RBP15.65■□□□□ 0.1
CLN3-249ENST00000636685 HDCP19113 662 aa15.65■□□□□ 0.1
CLN3-249ENST00000636685 PAX3P23760 479 aa15.65■□□□□ 0.1
CLN3-249ENST00000636685 CYP2F1P24903 491 aa15.65■□□□□ 0.1
CLN3-249ENST00000636685 MAOBP27338 520 aa15.65■□□□□ 0.1
CLN3-249ENST00000636685 RESTQ13127 1097 aa15.65■□□□□ 0.1
CLN3-249ENST00000636685 HAUS3Q68CZ6 603 aa15.65■□□□□ 0.1
CLN3-249ENST00000636685 DIS3L2Q8IYB7 885 aaKnown RBP15.65■□□□□ 0.1
CLN3-249ENST00000636685 ADGRG2Q8IZP9 1017 aa15.65■□□□□ 0.1
CLN3-249ENST00000636685 LSM14AQ8ND56 463 aaKnown RBP15.65■□□□□ 0.1
CLN3-249ENST00000636685 TMEM161BQ8NDZ6 487 aa15.65■□□□□ 0.1
CLN3-249ENST00000636685 BAHD1Q8TBE0 780 aaPredicted RBP15.65■□□□□ 0.1
CLN3-249ENST00000636685 ERLEC1Q96DZ1 483 aa15.65■□□□□ 0.1
CLN3-249ENST00000636685 MYRFLQ96LU7 910 aa15.65■□□□□ 0.1
CLN3-249ENST00000636685 FAM124BQ9H5Z6 455 aaPredicted RBP15.65■□□□□ 0.1
CLN3-249ENST00000636685 RPF1Q9H9Y2 349 aaKnown RBP15.65■□□□□ 0.1
CLN3-249ENST00000636685 A0A0A0MRY4 1105 aa15.64■□□□□ 0.09
CLN3-249ENST00000636685 ANO9A1A5B4 782 aa15.64■□□□□ 0.09
CLN3-249ENST00000636685 FAM189A1O60320 539 aa15.64■□□□□ 0.09
CLN3-249ENST00000636685 NFICP08651 508 aa15.64■□□□□ 0.09
CLN3-249ENST00000636685 OR52Z1P0C646 297 aa15.64■□□□□ 0.09
CLN3-249ENST00000636685 GRIA2P42262 883 aa15.64■□□□□ 0.09
CLN3-249ENST00000636685 WASP42768 502 aa15.64■□□□□ 0.09
CLN3-249ENST00000636685 TNFRSF4P43489 277 aa15.64■□□□□ 0.09
CLN3-249ENST00000636685 ATP2C1P98194 919 aaPredicted RBP15.64■□□□□ 0.09
CLN3-249ENST00000636685 PDCD7Q8N8D1 485 aaKnown RBP15.64■□□□□ 0.09
CLN3-249ENST00000636685 WASF1Q92558 559 aa15.64■□□□□ 0.09
CLN3-249ENST00000636685 ZNF419Q96HQ0 510 aaPredicted RBP15.64■□□□□ 0.09
CLN3-249ENST00000636685 NTPCRQ9BSD7 190 aaKnown RBP15.64■□□□□ 0.09
CLN3-249ENST00000636685 CD93Q9NPY3 652 aa15.64■□□□□ 0.09
CLN3-249ENST00000636685 SUSD2Q9UGT4 822 aa15.64■□□□□ 0.09
CLN3-249ENST00000636685 ADRB2P07550 413 aa15.63■□□□□ 0.09
CLN3-249ENST00000636685 GNSP15586 552 aa15.63■□□□□ 0.09
CLN3-249ENST00000636685 RPL10AP62906 217 aaKnown RBP15.63■□□□□ 0.09
CLN3-249ENST00000636685 TSPY1Q01534 308 aa15.63■□□□□ 0.09
CLN3-249ENST00000636685 RAD51AP2Q09MP3 1159 aa15.63■□□□□ 0.09
CLN3-249ENST00000636685 ZNF174Q15697 407 aa15.63■□□□□ 0.09
CLN3-249ENST00000636685 RINT1Q6NUQ1 792 aa15.63■□□□□ 0.09
CLN3-249ENST00000636685 RHBDF2Q6PJF5 856 aa15.63■□□□□ 0.09
CLN3-249ENST00000636685 C1orf186Q6ZWK4 172 aa15.63■□□□□ 0.09
CLN3-249ENST00000636685 GALNT15Q8N3T1 639 aa15.63■□□□□ 0.09
CLN3-249ENST00000636685 SPIRE2Q8WWL2 714 aa15.63■□□□□ 0.09
CLN3-249ENST00000636685 BICD1Q96G01 975 aa15.63■□□□□ 0.09
CLN3-249ENST00000636685 FCRL3Q96P31 734 aaPredicted RBP15.63■□□□□ 0.09
CLN3-249ENST00000636685 ZDHHC5Q9C0B5 715 aa15.63■□□□□ 0.09
CLN3-249ENST00000636685 C17orf75Q9HAS0 396 aa15.63■□□□□ 0.09
CLN3-249ENST00000636685 MGAQ8IWI9 3026 aa15.62■□□□□ 0.09
CLN3-249ENST00000636685 ARHGAP6O43182 974 aa15.62■□□□□ 0.09
CLN3-249ENST00000636685 PFKFB2O60825 505 aa15.62■□□□□ 0.09
CLN3-249ENST00000636685 NDUFS2O75306 463 aa15.62■□□□□ 0.09
CLN3-249ENST00000636685 HOXB2P14652 356 aa15.62■□□□□ 0.09
CLN3-249ENST00000636685 NDUFV2P19404 249 aa15.62■□□□□ 0.09
CLN3-249ENST00000636685 EIF2DP41214 584 aaKnown RBP15.62■□□□□ 0.09
CLN3-249ENST00000636685 TAF6P49848 677 aa15.62■□□□□ 0.09
CLN3-249ENST00000636685 CFHR1Q03591 330 aa15.62■□□□□ 0.09
CLN3-249ENST00000636685 TMEM132DQ14C87 1099 aa15.62■□□□□ 0.09
CLN3-249ENST00000636685 NFE2Q16621 373 aaPredicted RBP15.62■□□□□ 0.09
CLN3-249ENST00000636685 CCDC142Q17RM4 750 aa15.62■□□□□ 0.09
CLN3-249ENST00000636685 SYCP2LQ5T4T6 812 aa15.62■□□□□ 0.09
CLN3-249ENST00000636685 PHTF2Q8N3S3 785 aa15.62■□□□□ 0.09
CLN3-249ENST00000636685 ZNF513Q8N8E2 541 aaPredicted RBP15.62■□□□□ 0.09
CLN3-249ENST00000636685 FSIP1Q8NA03 581 aa15.62■□□□□ 0.09
CLN3-249ENST00000636685 RHBDD1Q8TEB9 315 aa15.62■□□□□ 0.09
CLN3-249ENST00000636685 TSPAN18Q96SJ8 248 aa15.62■□□□□ 0.09
CLN3-249ENST00000636685 GAREM1Q9H706 876 aa15.62■□□□□ 0.09
CLN3-249ENST00000636685 TM7SF3Q9NS93 570 aa15.62■□□□□ 0.09
CLN3-249ENST00000636685 PDRG1Q9NUG6 133 aa15.62■□□□□ 0.09
CLN3-249ENST00000636685 HCN2Q9UL51 889 aa15.62■□□□□ 0.09
CLN3-249ENST00000636685 FNDC3AQ9Y2H6 1198 aaKnown RBP15.62■□□□□ 0.09
CLN3-249ENST00000636685 ATMQ13315 3056 aa15.61■□□□□ 0.09
CLN3-249ENST00000636685 A0A1W2PQF6 199 aa15.61■□□□□ 0.09
CLN3-249ENST00000636685 TBC1D3BA6NDS4 549 aa15.61■□□□□ 0.09
CLN3-249ENST00000636685 PYCARD-AS1I3L0S3 204 aa15.61■□□□□ 0.09
CLN3-249ENST00000636685 CAPN9O14815 690 aa15.61■□□□□ 0.09
CLN3-249ENST00000636685 OGTO15294 1046 aa15.61■□□□□ 0.09
CLN3-249ENST00000636685 CILPO75339 1184 aa15.61■□□□□ 0.09
CLN3-249ENST00000636685 ZNF217O75362 1048 aa15.61■□□□□ 0.09
CLN3-249ENST00000636685 ADH5P11766 374 aa15.61■□□□□ 0.09
CLN3-249ENST00000636685 IRX6P78412 446 aaPredicted RBP15.61■□□□□ 0.09
CLN3-249ENST00000636685 CCDC157Q569K6 752 aa15.61■□□□□ 0.09
CLN3-249ENST00000636685 PCSK4Q6UW60 755 aa15.61■□□□□ 0.09
CLN3-249ENST00000636685 MIB1Q86YT6 1006 aa15.61■□□□□ 0.09
CLN3-249ENST00000636685 CDC6Q99741 560 aa15.61■□□□□ 0.09
CLN3-249ENST00000636685 SLC6A17Q9H1V8 727 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms