RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 TRPM5Q9NZQ8 1165 aa17.25■□□□□ 0.35
CLN3-246ENST00000636228 INVSQ9Y283 1065 aa17.25■□□□□ 0.35
CLN3-246ENST00000636228 KIF26AQ9ULI4 1882 aaPredicted RBP17.24■□□□□ 0.35
CLN3-246ENST00000636228 CCDC163A0A0D9SF12 145 aa17.24■□□□□ 0.35
CLN3-246ENST00000636228 F8VP50 259 aa17.24■□□□□ 0.35
CLN3-246ENST00000636228 LEFTY2O00292 366 aa17.24■□□□□ 0.35
CLN3-246ENST00000636228 CLDN5O00501 218 aa17.24■□□□□ 0.35
CLN3-246ENST00000636228 PPP6R2O75170 966 aa17.24■□□□□ 0.35
CLN3-246ENST00000636228 EPN2O95208 641 aa17.24■□□□□ 0.35
CLN3-246ENST00000636228 ADRB1P08588 477 aa17.24■□□□□ 0.35
CLN3-246ENST00000636228 ANXA13P27216 316 aa17.24■□□□□ 0.35
CLN3-246ENST00000636228 CYP24A1Q07973 514 aa17.24■□□□□ 0.35
CLN3-246ENST00000636228 DMC1Q14565 340 aa17.24■□□□□ 0.35
CLN3-246ENST00000636228 MAPRE1Q15691 268 aaKnown RBP17.24■□□□□ 0.35
CLN3-246ENST00000636228 CAMKK1Q8N5S9 505 aa17.24■□□□□ 0.35
CLN3-246ENST00000636228 C12orf50Q8NA57 414 aaPredicted RBP17.24■□□□□ 0.35
CLN3-246ENST00000636228 MYCBPAPQ8TBZ2 947 aa17.24■□□□□ 0.35
CLN3-246ENST00000636228 SCFD1Q8WVM8 642 aa17.24■□□□□ 0.35
CLN3-246ENST00000636228 ZNF396Q96N95 335 aaPredicted RBP17.24■□□□□ 0.35
CLN3-246ENST00000636228 FNBP1Q96RU3 617 aa17.24■□□□□ 0.35
CLN3-246ENST00000636228 CGRRF1Q99675 332 aa17.24■□□□□ 0.35
CLN3-246ENST00000636228 C7orf25Q9BPX7 421 aa17.24■□□□□ 0.35
CLN3-246ENST00000636228 GZF1Q9H116 711 aaPredicted RBP17.24■□□□□ 0.35
CLN3-246ENST00000636228 CUEDC2Q9H467 287 aa17.24■□□□□ 0.35
CLN3-246ENST00000636228 KIAA1586Q9HCI6 787 aa17.24■□□□□ 0.35
CLN3-246ENST00000636228 TMEM30AQ9NV96 361 aa17.24■□□□□ 0.35
CLN3-246ENST00000636228 SMPD4Q9NXE4 827 aa17.24■□□□□ 0.35
CLN3-246ENST00000636228 ARHGAP26Q9UNA1 814 aa17.24■□□□□ 0.35
CLN3-246ENST00000636228 EIF3DO15371 548 aaKnown RBP eCLIP17.23■□□□□ 0.35
CLN3-246ENST00000636228 POLR2DO15514 142 aaKnown RBP17.23■□□□□ 0.35
CLN3-246ENST00000636228 CUTAO60888 179 aa17.23■□□□□ 0.35
CLN3-246ENST00000636228 ZNF806P0C7X5 589 aa17.23■□□□□ 0.35
CLN3-246ENST00000636228 PTPN1P18031 435 aaKnown RBP17.23■□□□□ 0.35
CLN3-246ENST00000636228 MYL6P60660 151 aa17.23■□□□□ 0.35
CLN3-246ENST00000636228 AMPD3Q01432 767 aa17.23■□□□□ 0.35
CLN3-246ENST00000636228 IFRD2Q12894 506 aaPredicted RBP17.23■□□□□ 0.35
CLN3-246ENST00000636228 NR1H3Q13133 447 aa17.23■□□□□ 0.35
CLN3-246ENST00000636228 PSMD6Q15008 389 aa17.23■□□□□ 0.35
CLN3-246ENST00000636228 WDR72Q3MJ13 1102 aa17.23■□□□□ 0.35
CLN3-246ENST00000636228 PLK5Q496M5 336 aa17.23■□□□□ 0.35
CLN3-246ENST00000636228 FBXO43Q4G163 708 aa17.23■□□□□ 0.35
CLN3-246ENST00000636228 C2orf27AQ580R0 203 aa17.23■□□□□ 0.35
CLN3-246ENST00000636228 SYT13Q7L8C5 426 aa17.23■□□□□ 0.35
CLN3-246ENST00000636228 IQUBQ8NA54 791 aa17.23■□□□□ 0.35
CLN3-246ENST00000636228 LOXL4Q96JB6 756 aa17.23■□□□□ 0.35
CLN3-246ENST00000636228 ZNF518BQ9C0D4 1074 aa17.23■□□□□ 0.35
CLN3-246ENST00000636228 DUSP15Q9H1R2 295 aaPredicted RBP17.23■□□□□ 0.35
CLN3-246ENST00000636228 SLC39A2Q9NP94 309 aa17.23■□□□□ 0.35
CLN3-246ENST00000636228 NXF1Q9UBU9 619 aaKnown RBP17.23■□□□□ 0.35
CLN3-246ENST00000636228 CPQQ9Y646 472 aa17.23■□□□□ 0.35
CLN3-246ENST00000636228 ZNF840PA6NDX5 716 aa17.22■□□□□ 0.35
CLN3-246ENST00000636228 OPRD1P41143 372 aa17.22■□□□□ 0.35
CLN3-246ENST00000636228 AFMP43652 599 aa17.22■□□□□ 0.35
CLN3-246ENST00000636228 SLC6A11P48066 632 aa17.22■□□□□ 0.35
CLN3-246ENST00000636228 CASP4P49662 377 aa17.22■□□□□ 0.35
CLN3-246ENST00000636228 DGKEP52429 567 aa17.22■□□□□ 0.35
CLN3-246ENST00000636228 TNNC1P63316 161 aa17.22■□□□□ 0.35
CLN3-246ENST00000636228 TAF10Q12962 218 aa17.22■□□□□ 0.35
CLN3-246ENST00000636228 IL31Q6EBC2 164 aa17.22■□□□□ 0.35
CLN3-246ENST00000636228 TCEAL6Q6IPX3 200 aa17.22■□□□□ 0.35
CLN3-246ENST00000636228 FILIP1Q7Z7B0 1213 aa17.22■□□□□ 0.35
CLN3-246ENST00000636228 SFTPA1Q8IWL2 248 aa17.22■□□□□ 0.35
CLN3-246ENST00000636228 GRAMD1CQ8IYS0 662 aa17.22■□□□□ 0.35
CLN3-246ENST00000636228 XXYLT1Q8NBI6 393 aa17.22■□□□□ 0.35
CLN3-246ENST00000636228 TCEAL3Q969E4 200 aa17.22■□□□□ 0.35
CLN3-246ENST00000636228 EXOC4Q96A65 974 aa17.22■□□□□ 0.35
CLN3-246ENST00000636228 TTLL2Q9BWV7 592 aa17.22■□□□□ 0.35
CLN3-246ENST00000636228 B3GNT5Q9BYG0 378 aa17.22■□□□□ 0.35
CLN3-246ENST00000636228 TPSD1Q9BZJ3 242 aa17.22■□□□□ 0.35
CLN3-246ENST00000636228 A8MXQ7 604 aa17.21■□□□□ 0.35
CLN3-246ENST00000636228 K7EQS6 105 aa17.21■□□□□ 0.35
CLN3-246ENST00000636228 TRIM66O15016 1216 aa17.21■□□□□ 0.35
CLN3-246ENST00000636228 TACC1O75410 805 aa17.21■□□□□ 0.35
CLN3-246ENST00000636228 KRT37O76014 449 aa17.21■□□□□ 0.35
CLN3-246ENST00000636228 NFATC1O95644 943 aa17.21■□□□□ 0.35
CLN3-246ENST00000636228 APBB3O95704 486 aa17.21■□□□□ 0.35
CLN3-246ENST00000636228 TCF3P15923 654 aa17.21■□□□□ 0.35
CLN3-246ENST00000636228 MPLP40238 635 aa17.21■□□□□ 0.35
CLN3-246ENST00000636228 CDH8P55286 799 aa17.21■□□□□ 0.35
CLN3-246ENST00000636228 EHHADHQ08426 723 aa17.21■□□□□ 0.35
CLN3-246ENST00000636228 MESP2Q0VG99 397 aa17.21■□□□□ 0.35
CLN3-246ENST00000636228 TRPC3Q13507 836 aa17.21■□□□□ 0.35
CLN3-246ENST00000636228 CUL4BQ13620 913 aa17.21■□□□□ 0.35
CLN3-246ENST00000636228 GAB4Q2WGN9 574 aa17.21■□□□□ 0.35
CLN3-246ENST00000636228 PLA2G2CQ5R387 149 aa17.21■□□□□ 0.35
CLN3-246ENST00000636228 CNNM4Q6P4Q7 775 aa17.21■□□□□ 0.35
CLN3-246ENST00000636228 UNC13DQ70J99 1090 aa17.21■□□□□ 0.35
CLN3-246ENST00000636228 CCDC33Q8N5R6 958 aa17.21■□□□□ 0.35
CLN3-246ENST00000636228 PLEKHO2Q8TD55 490 aa17.21■□□□□ 0.35
CLN3-246ENST00000636228 ZC3H10Q96K80 434 aaKnown RBP17.21■□□□□ 0.35
CLN3-246ENST00000636228 C8orf48Q96LL4 319 aa17.21■□□□□ 0.35
CLN3-246ENST00000636228 BACH2Q9BYV9 841 aa17.21■□□□□ 0.35
CLN3-246ENST00000636228 SPTBN2O15020 2390 aa17.2■□□□□ 0.34
CLN3-246ENST00000636228 FOXD2O60548 495 aaPredicted RBP17.2■□□□□ 0.34
CLN3-246ENST00000636228 PHACTR2O75167 634 aa17.2■□□□□ 0.34
CLN3-246ENST00000636228 AKAP3O75969 853 aa17.2■□□□□ 0.34
CLN3-246ENST00000636228 YEATS4O95619 227 aa17.2■□□□□ 0.34
CLN3-246ENST00000636228 CYP17A1P05093 508 aa17.2■□□□□ 0.34
CLN3-246ENST00000636228 NOP14P78316 857 aaKnown RBP17.2■□□□□ 0.34
CLN3-246ENST00000636228 STPG1Q5TH74 334 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms