RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 PFKLP17858 780 aa25.4■■□□□ 1.66
CPSF1-214ENST00000622776 HOXD13P35453 343 aa25.4■■□□□ 1.66
CPSF1-214ENST00000622776 CYP27A1Q02318 531 aa25.4■■□□□ 1.66
CPSF1-214ENST00000622776 N4BP2L1Q5TBK1 243 aaPredicted RBP25.4■■□□□ 1.66
CPSF1-214ENST00000622776 WDR49Q8IV35 697 aa25.4■■□□□ 1.66
CPSF1-214ENST00000622776 CCDC26Q8TAB7 109 aa25.4■■□□□ 1.66
CPSF1-214ENST00000622776 TNMDQ9H2S6 317 aa25.4■■□□□ 1.66
CPSF1-214ENST00000622776 KIAA1586Q9HCI6 787 aa25.4■■□□□ 1.66
CPSF1-214ENST00000622776 GON4LQ3T8J9 2241 aa25.4■■□□□ 1.66
CPSF1-214ENST00000622776 LEFTY2O00292 366 aa25.39■■□□□ 1.66
CPSF1-214ENST00000622776 ANXA13P27216 316 aa25.39■■□□□ 1.66
CPSF1-214ENST00000622776 ZXDBP98169 803 aa25.39■■□□□ 1.66
CPSF1-214ENST00000622776 ST3GAL2Q16842 350 aa25.39■■□□□ 1.66
CPSF1-214ENST00000622776 TRAPPC11Q7Z392 1133 aa25.39■■□□□ 1.66
CPSF1-214ENST00000622776 MYCBPAPQ8TBZ2 947 aa25.39■■□□□ 1.66
CPSF1-214ENST00000622776 USP33Q8TEY7 942 aa25.39■■□□□ 1.66
CPSF1-214ENST00000622776 PCED1BQ96HM7 432 aa25.39■■□□□ 1.66
CPSF1-214ENST00000622776 CHAMP1Q96JM3 812 aa25.39■■□□□ 1.66
CPSF1-214ENST00000622776 TTLL2Q9BWV7 592 aa25.39■■□□□ 1.66
CPSF1-214ENST00000622776 LRRC27Q9C0I9 530 aa25.39■■□□□ 1.66
CPSF1-214ENST00000622776 MYO16Q9Y6X6 1858 aa25.38■■□□□ 1.65
CPSF1-214ENST00000622776 OPRD1P41143 372 aa25.38■■□□□ 1.65
CPSF1-214ENST00000622776 NASPP49321 788 aaPredicted RBP25.38■■□□□ 1.65
CPSF1-214ENST00000622776 DGKEP52429 567 aa25.38■■□□□ 1.65
CPSF1-214ENST00000622776 TCEAL6Q6IPX3 200 aa25.38■■□□□ 1.65
CPSF1-214ENST00000622776 TSTD1Q8NFU3 115 aa25.38■■□□□ 1.65
CPSF1-214ENST00000622776 TCEAL3Q969E4 200 aa25.38■■□□□ 1.65
CPSF1-214ENST00000622776 MRPL45Q9BRJ2 306 aaKnown RBP25.38■■□□□ 1.65
CPSF1-214ENST00000622776 ZSCAN16Q9H4T2 348 aaPredicted RBP25.38■■□□□ 1.65
CPSF1-214ENST00000622776 KBTBD4Q9NVX7 518 aa25.38■■□□□ 1.65
CPSF1-214ENST00000622776 EHD2Q9NZN4 543 aa25.38■■□□□ 1.65
CPSF1-214ENST00000622776 PTPRDP23468 1912 aa25.37■■□□□ 1.65
CPSF1-214ENST00000622776 ZNF840PA6NDX5 716 aa25.37■■□□□ 1.65
CPSF1-214ENST00000622776 TRIM66O15016 1216 aa25.37■■□□□ 1.65
CPSF1-214ENST00000622776 EIF3DO15371 548 aaKnown RBP eCLIP25.37■■□□□ 1.653e-6■■■■□ 21.9
CPSF1-214ENST00000622776 CST3P01034 146 aaPredicted RBP25.37■■□□□ 1.65
CPSF1-214ENST00000622776 GNL1P36915 607 aaPredicted RBP25.37■■□□□ 1.65
CPSF1-214ENST00000622776 CREB5Q02930 508 aa25.37■■□□□ 1.65
CPSF1-214ENST00000622776 STK38Q15208 465 aa25.37■■□□□ 1.65
CPSF1-214ENST00000622776 E2F4Q16254 413 aa25.37■■□□□ 1.65
CPSF1-214ENST00000622776 GAB4Q2WGN9 574 aa25.37■■□□□ 1.65
CPSF1-214ENST00000622776 MDH1BQ5I0G3 518 aa25.37■■□□□ 1.65
CPSF1-214ENST00000622776 RNF43Q68DV7 783 aa25.37■■□□□ 1.65
CPSF1-214ENST00000622776 RDH13Q8NBN7 331 aa25.37■■□□□ 1.65
CPSF1-214ENST00000622776 C8orf48Q96LL4 319 aa25.37■■□□□ 1.65
CPSF1-214ENST00000622776 TRIM9Q9C026 710 aa25.37■■□□□ 1.65
CPSF1-214ENST00000622776 SNX25Q9H3E2 840 aa25.37■■□□□ 1.65
CPSF1-214ENST00000622776 NME7Q9Y5B8 376 aa25.37■■□□□ 1.65
CPSF1-214ENST00000622776 HELZP42694 1942 aaKnown RBP25.37■■□□□ 1.65
CPSF1-214ENST00000622776 KIAA1549LQ6ZVL6 1849 aa25.36■■□□□ 1.65
CPSF1-214ENST00000622776 BCLAF3A2AJT9 711 aaKnown RBP25.36■■□□□ 1.65
CPSF1-214ENST00000622776 F8VP50 259 aa25.36■■□□□ 1.65
CPSF1-214ENST00000622776 K7EQS6 105 aa25.36■■□□□ 1.65
CPSF1-214ENST00000622776 TACC1O75410 805 aa25.36■■□□□ 1.65
CPSF1-214ENST00000622776 CAVIN2O95810 425 aa25.36■■□□□ 1.65
CPSF1-214ENST00000622776 CENPBP07199 599 aaPredicted RBP25.36■■□□□ 1.65
CPSF1-214ENST00000622776 DLATP10515 647 aaKnown RBP25.36■■□□□ 1.65
CPSF1-214ENST00000622776 PMLP29590 882 aa25.36■■□□□ 1.65
CPSF1-214ENST00000622776 GBP1P32455 592 aa25.36■■□□□ 1.65
CPSF1-214ENST00000622776 PPP3CCP48454 512 aa25.36■■□□□ 1.65
CPSF1-214ENST00000622776 SEC13P55735 322 aa25.36■■□□□ 1.65
CPSF1-214ENST00000622776 NOP14P78316 857 aaKnown RBP25.36■■□□□ 1.65
CPSF1-214ENST00000622776 SLC7A9P82251 487 aa25.36■■□□□ 1.65
CPSF1-214ENST00000622776 SNRNP35Q16560 246 aaKnown RBP25.36■■□□□ 1.65
CPSF1-214ENST00000622776 C2orf27AQ580R0 203 aa25.36■■□□□ 1.65
CPSF1-214ENST00000622776 EPM2AIP1Q7L775 607 aaPredicted RBP25.36■■□□□ 1.65
CPSF1-214ENST00000622776 HS2ST1Q7LGA3 356 aa25.36■■□□□ 1.65
CPSF1-214ENST00000622776 LINC00301Q8NCQ3 95 aa25.36■■□□□ 1.65
CPSF1-214ENST00000622776 ZNF507Q8TCN5 953 aa25.36■■□□□ 1.65
CPSF1-214ENST00000622776 INTS4Q96HW7 963 aaKnown RBP25.36■■□□□ 1.65
CPSF1-214ENST00000622776 LSM14BQ9BX40 385 aaKnown RBP25.36■■□□□ 1.65
CPSF1-214ENST00000622776 RNF38Q9H0F5 515 aa25.36■■□□□ 1.65
CPSF1-214ENST00000622776 ANGPTL2Q9UKU9 493 aa25.36■■□□□ 1.65
CPSF1-214ENST00000622776 INVSQ9Y283 1065 aa25.36■■□□□ 1.65
CPSF1-214ENST00000622776 LAMA1P25391 3075 aa25.35■■□□□ 1.65
CPSF1-214ENST00000622776 CHD6Q8TD26 2715 aa25.35■■□□□ 1.65
CPSF1-214ENST00000622776 FAM163BP0C2L3 166 aa25.35■■□□□ 1.65
CPSF1-214ENST00000622776 TNNI1P19237 187 aa25.35■■□□□ 1.65
CPSF1-214ENST00000622776 ASIC1P78348 528 aa25.35■■□□□ 1.65
CPSF1-214ENST00000622776 USP39Q53GS9 565 aaKnown RBP25.35■■□□□ 1.65
CPSF1-214ENST00000622776 FILIP1Q7Z7B0 1213 aa25.35■■□□□ 1.65
CPSF1-214ENST00000622776 KIAA1958Q8N8K9 716 aa25.35■■□□□ 1.65
CPSF1-214ENST00000622776 OR6B3Q8NGW1 331 aa25.35■■□□□ 1.65
CPSF1-214ENST00000622776 FNBP1Q96RU3 617 aa25.35■■□□□ 1.65
CPSF1-214ENST00000622776 CUEDC2Q9H467 287 aa25.35■■□□□ 1.65
CPSF1-214ENST00000622776 AGPAT3Q9NRZ7 376 aa25.35■■□□□ 1.65
CPSF1-214ENST00000622776 ANTXRLA6NF34 631 aa25.34■■□□□ 1.65
CPSF1-214ENST00000622776 TGFB1I1O43294 461 aa25.34■■□□□ 1.65
CPSF1-214ENST00000622776 OLFM2O95897 454 aa25.34■■□□□ 1.65
CPSF1-214ENST00000622776 ABL1P00519 1130 aa25.34■■□□□ 1.65
CPSF1-214ENST00000622776 CYP17A1P05093 508 aa25.34■■□□□ 1.65
CPSF1-214ENST00000622776 PTPN1P18031 435 aaKnown RBP25.34■■□□□ 1.65
CPSF1-214ENST00000622776 AMPD3Q01432 767 aa25.34■■□□□ 1.65
CPSF1-214ENST00000622776 PSMD6Q15008 389 aa25.34■■□□□ 1.65
CPSF1-214ENST00000622776 FAM26FQ5R3K3 315 aa25.34■■□□□ 1.65
CPSF1-214ENST00000622776 C11orf74Q86VG3 221 aa25.34■■□□□ 1.65
CPSF1-214ENST00000622776 ADGRG2Q8IZP9 1017 aa25.34■■□□□ 1.65
CPSF1-214ENST00000622776 CCDC127Q96BQ5 260 aa25.34■■□□□ 1.65
CPSF1-214ENST00000622776 CGRRF1Q99675 332 aa25.34■■□□□ 1.65
CPSF1-214ENST00000622776 EDEM2Q9BV94 578 aa25.34■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms