RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 PCDHA3Q9Y5H8 950 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 SFI1A8K8P3 1242 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 MSL3P1P0C860 447 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 RAG1P15918 1043 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 SLC16A2P36021 539 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 ALDH1A3P47895 512 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 SLC18A1P54219 525 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 ESRRGP62508 458 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 ADAM17P78536 824 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 MYBPC1Q00872 1141 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 ZNF568Q3ZCX4 644 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 PRUNE1Q86TP1 453 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 APPL2Q8NEU8 664 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 TSPAN14Q8NG11 270 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 GOT1L1Q8NHS2 421 aaPredicted RBP8.25□□□□□ -1.09
VPS11-209ENST00000622309 GIMAP1Q8WWP7 306 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 JADE3Q92613 823 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 ALG3Q92685 438 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 DCUN1D1Q96GG9 259 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 C9orf72Q96LT7 481 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 NMUR2Q9GZQ4 415 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 KLC2Q9H0B6 622 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 MANSC1Q9H8J5 431 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 PCDH12Q9NPG4 1184 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 TAGLN3Q9UI15 199 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 AP4B1Q9Y6B7 739 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 RTL9Q8NET4 1388 aa8.25□□□□□ -1.09
VPS11-209ENST00000622309 FRMPD4Q14CM0 1322 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 GRXCR2A6NFK2 248 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 CASQ2O14958 399 aaPredicted RBP8.24□□□□□ -1.09
VPS11-209ENST00000622309 KMOO15229 486 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 DNAJA2O60884 412 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 GMNNO75496 209 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 MTRF1O75570 445 aaKnown RBP8.24□□□□□ -1.09
VPS11-209ENST00000622309 RECKO95980 971 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 PCCAP05165 728 aaPredicted RBP8.24□□□□□ -1.09
VPS11-209ENST00000622309 LDHBP07195 334 aaKnown RBP8.24□□□□□ -1.09
VPS11-209ENST00000622309 CD48P09326 243 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 POLR2MP0CAP2 368 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 MYL2P10916 166 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 ALAS1P13196 640 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 CCDC130P13994 396 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 CTNNA2P26232 953 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 PON1P27169 355 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 ANXA13P27216 316 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 STAT2P52630 851 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 EPHB1P54762 984 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 KRT76Q01546 638 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 KRT17Q04695 432 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 SNAPC2Q13487 334 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 KYAT3Q6YP21 454 aaKnown RBP8.24□□□□□ -1.09
VPS11-209ENST00000622309 SV2BQ7L1I2 683 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 DYMQ7RTS9 669 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.24□□□□□ -1.09
VPS11-209ENST00000622309 FBXO27Q8NI29 283 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 MAML1Q92585 1016 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 SGF29Q96ES7 293 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 SNF8Q96H20 258 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 UROC1Q96N76 676 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 SNX25Q9H3E2 840 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 ANLNQ9NQW6 1124 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 GPRC5DQ9NZD1 345 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 GNPTGQ9UJJ9 305 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 RAB26Q9ULW5 256 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 ATP11BQ9Y2G3 1177 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 WNK3Q9BYP7 1800 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 STAM2O75886 525 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 CRTAMO95727 393 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 FOSP01100 380 aaPredicted RBP8.24□□□□□ -1.09
VPS11-209ENST00000622309 UBL4AP11441 157 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 ACTN1P12814 892 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 PDE6AP16499 860 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 ARL4CP56559 192 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 BPIFB3P59826 476 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 MRPS9P82933 396 aaKnown RBP8.24□□□□□ -1.09
VPS11-209ENST00000622309 CAV1Q03135 178 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 APOFQ13790 326 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 LRRC41Q15345 812 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 PKN2Q16513 984 aaKnown RBP8.24□□□□□ -1.09
VPS11-209ENST00000622309 CYP2A13Q16696 494 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 TTC23LQ6PF05 361 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 PCGF5Q86SE9 256 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 ITIH5Q86UX2 942 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 CCDC24Q8N4L8 307 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 TAMM41Q96BW9 452 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 CSRNP1Q96S65 589 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 POP1Q99575 1024 aaKnown RBP8.24□□□□□ -1.09
VPS11-209ENST00000622309 OLFM1Q99784 485 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 GANQ9H2C0 597 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 SEPT11Q9NVA2 429 aaKnown RBP8.24□□□□□ -1.09
VPS11-209ENST00000622309 PADI4Q9UM07 663 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 FAM170AA1A519 330 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 A6NCN8 305 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 C2orf71A6NGG8 1288 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 MINDY4BA8MYZ0 360 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 MIF4GDA9UHW6 222 aaKnown RBP8.24□□□□□ -1.09
VPS11-209ENST00000622309 KPNA4O00629 521 aaPredicted RBP8.24□□□□□ -1.09
VPS11-209ENST00000622309 ATF2P15336 505 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 JAK1P23458 1154 aa8.24□□□□□ -1.09
VPS11-209ENST00000622309 ITGA8P53708 1063 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms