RNA–Protein interactions for RNA: ENST00000622020.4

NPHP4-211, Transcript of nephrocystin 4, humanhuman

TSL 5 BASIC

Gene NPHP4, Length 3,004 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-211ENST00000622020 LRRC36Q1X8D7 754 aa16.5■□□□□ 0.23
NPHP4-211ENST00000622020 TMEM35BQ8NCS4 154 aa16.5■□□□□ 0.23
NPHP4-211ENST00000622020 SHKBP1Q8TBC3 707 aa16.5■□□□□ 0.23
NPHP4-211ENST00000622020 ACAP3Q96P50 834 aa16.5■□□□□ 0.23
NPHP4-211ENST00000622020 TTC1Q99614 292 aa16.5■□□□□ 0.23
NPHP4-211ENST00000622020 PPARGC1AQ9UBK2 798 aaKnown RBP16.5■□□□□ 0.23
NPHP4-211ENST00000622020 SNCAIPQ9Y6H5 919 aa16.5■□□□□ 0.23
NPHP4-211ENST00000622020 KIF3CO14782 793 aa16.49■□□□□ 0.23
NPHP4-211ENST00000622020 UGT1A9O60656 530 aa16.49■□□□□ 0.23
NPHP4-211ENST00000622020 GRAP2O75791 330 aa16.49■□□□□ 0.23
NPHP4-211ENST00000622020 PGM1P36871 562 aa16.49■□□□□ 0.23
NPHP4-211ENST00000622020 VHLP40337 213 aa16.49■□□□□ 0.23
NPHP4-211ENST00000622020 SP2Q02086 613 aa16.49■□□□□ 0.23
NPHP4-211ENST00000622020 PRAMEF18Q5VWM3 479 aa16.49■□□□□ 0.23
NPHP4-211ENST00000622020 C1orf228Q6PIY5 440 aa16.49■□□□□ 0.23
NPHP4-211ENST00000622020 ZCCHC23Q6ZST2 131 aa16.49■□□□□ 0.23
NPHP4-211ENST00000622020 ARID3BQ8IVW6 561 aaPredicted RBP16.49■□□□□ 0.23
NPHP4-211ENST00000622020 SPATA18Q8TC71 538 aa16.49■□□□□ 0.23
NPHP4-211ENST00000622020 UGT1A7Q9HAW7 530 aa16.49■□□□□ 0.23
NPHP4-211ENST00000622020 UGT1A10Q9HAW8 530 aa16.49■□□□□ 0.23
NPHP4-211ENST00000622020 UGT1A8Q9HAW9 530 aa16.49■□□□□ 0.23
NPHP4-211ENST00000622020 SRGAP2CP0DJJ0 459 aa16.49■□□□□ 0.23
NPHP4-211ENST00000622020 FSTL1Q12841 308 aa16.49■□□□□ 0.23
NPHP4-211ENST00000622020 PTPN20Q4JDL3 420 aa16.49■□□□□ 0.23
NPHP4-211ENST00000622020 SNRNP48Q6IEG0 339 aaKnown RBP16.49■□□□□ 0.23
NPHP4-211ENST00000622020 LRRC74BQ6ZQY2 392 aa16.49■□□□□ 0.23
NPHP4-211ENST00000622020 VSIG10LQ86VR7 867 aa16.49■□□□□ 0.23
NPHP4-211ENST00000622020 TEX9Q8N6V9 391 aa16.49■□□□□ 0.23
NPHP4-211ENST00000622020 MZB1Q8WU39 189 aa16.49■□□□□ 0.23
NPHP4-211ENST00000622020 NKD2Q969F2 451 aaPredicted RBP16.49■□□□□ 0.23
NPHP4-211ENST00000622020 PTCD3Q96EY7 689 aaKnown RBP16.49■□□□□ 0.23
NPHP4-211ENST00000622020 CYTH4Q9UIA0 394 aa16.49■□□□□ 0.23
NPHP4-211ENST00000622020 POLIQ9UNA4 740 aa16.49■□□□□ 0.23
NPHP4-211ENST00000622020 PSMG1O95456 288 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 CALB1P05937 261 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 KCNA2P16389 499 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 SP100P23497 879 aaPredicted RBP16.48■□□□□ 0.23
NPHP4-211ENST00000622020 PSMC1P62191 440 aaKnown RBP16.48■□□□□ 0.23
NPHP4-211ENST00000622020 RASA2Q15283 850 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 SPDYE2Q495Y8 402 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 DARS2Q6PI48 645 aaKnown RBP16.48■□□□□ 0.23
NPHP4-211ENST00000622020 THNSL1Q8IYQ7 743 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 SHCBP1LQ9BZQ2 653 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 SYNPO2Q9UMS6 1093 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 TRIM49D1C9J1S8 452 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 USP1O94782 785 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 DLDP09622 509 aaKnown RBP16.48■□□□□ 0.23
NPHP4-211ENST00000622020 ALDH18A1P54886 795 aaKnown RBP16.48■□□□□ 0.23
NPHP4-211ENST00000622020 CDK16Q00536 496 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 MCL1Q07820 350 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 KLHL38Q2WGJ6 581 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 CCNJLQ8IV13 435 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 KBTBD2Q8IY47 623 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 OXNAD1Q96HP4 312 aaPredicted RBP16.48■□□□□ 0.23
NPHP4-211ENST00000622020 C2CD2Q9Y426 696 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 TRAFD1O14545 582 aaPredicted RBP16.48■□□□□ 0.23
NPHP4-211ENST00000622020 PLA2G6O60733 806 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 EGFRP00533 1210 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 KDELR1P24390 212 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 TBXAS1P24557 533 aaPredicted RBP16.48■□□□□ 0.23
NPHP4-211ENST00000622020 CCND2P30279 289 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 NEK3P51956 506 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 MRPS35P82673 323 aaKnown RBP16.48■□□□□ 0.23
NPHP4-211ENST00000622020 TMPRSS15P98073 1019 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 TRPC3Q13507 836 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 PIGHQ14442 188 aaPredicted RBP16.48■□□□□ 0.23
NPHP4-211ENST00000622020 TREML1Q86YW5 311 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 THTPAQ9BU02 230 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 C17orf75Q9HAS0 396 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 PDLIM7Q9NR12 457 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 SAR1AQ9NR31 198 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 LNPEPQ9UIQ6 1025 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 HEY1Q9Y5J3 304 aa16.48■□□□□ 0.23
NPHP4-211ENST00000622020 C3orf70A6NLC5 250 aaPredicted RBP16.47■□□□□ 0.23
NPHP4-211ENST00000622020 MEI4A8MW99 385 aa16.47■□□□□ 0.23
NPHP4-211ENST00000622020 CXorf49A8MYA2 514 aaPredicted RBP16.47■□□□□ 0.23
NPHP4-211ENST00000622020 ZNF200P98182 395 aaPredicted RBP16.47■□□□□ 0.23
NPHP4-211ENST00000622020 CCDC142Q17RM4 750 aa16.47■□□□□ 0.23
NPHP4-211ENST00000622020 DRICH1Q6PGQ1 229 aaPredicted RBP16.47■□□□□ 0.23
NPHP4-211ENST00000622020 EEPD1Q7L9B9 569 aa16.47■□□□□ 0.23
NPHP4-211ENST00000622020 CFAP61Q8NHU2 1237 aa16.47■□□□□ 0.23
NPHP4-211ENST00000622020 RILPQ96NA2 401 aa16.47■□□□□ 0.23
NPHP4-211ENST00000622020 CGRRF1Q99675 332 aa16.47■□□□□ 0.23
NPHP4-211ENST00000622020 VPS11Q9H270 941 aa16.47■□□□□ 0.23
NPHP4-211ENST00000622020 PAPOLBQ9NRJ5 636 aaKnown RBP16.47■□□□□ 0.23
NPHP4-211ENST00000622020 CNTNAP2Q9UHC6 1331 aa16.47■□□□□ 0.23
NPHP4-211ENST00000622020 COPEO14579 308 aa16.47■□□□□ 0.23
NPHP4-211ENST00000622020 WDR46O15213 610 aaKnown RBP16.47■□□□□ 0.23
NPHP4-211ENST00000622020 ACADSP16219 412 aa16.47■□□□□ 0.23
NPHP4-211ENST00000622020 KCNA3P22001 575 aa16.47■□□□□ 0.23
NPHP4-211ENST00000622020 SERPINB4P48594 390 aa16.47■□□□□ 0.23
NPHP4-211ENST00000622020 SLC18A1P54219 525 aa16.47■□□□□ 0.23
NPHP4-211ENST00000622020 CLDN10P78369 228 aa16.47■□□□□ 0.23
NPHP4-211ENST00000622020 DPYSL3Q14195 570 aa16.47■□□□□ 0.23
NPHP4-211ENST00000622020 AP1ARQ63HQ0 302 aa16.47■□□□□ 0.23
NPHP4-211ENST00000622020 CEP120Q8N960 986 aa16.47■□□□□ 0.23
NPHP4-211ENST00000622020 FAF2Q96CS3 445 aa16.47■□□□□ 0.23
NPHP4-211ENST00000622020 SRPK1Q96SB4 655 aaKnown RBP16.47■□□□□ 0.23
NPHP4-211ENST00000622020 H7C0C1 242 aa16.46■□□□□ 0.23
NPHP4-211ENST00000622020 ATP5OP48047 213 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms