RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 C3orf20Q8ND61 904 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 SLAIN1Q8ND83 568 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 SEPT8Q92599 483 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 BRCA1P38398 1863 aaKnown RBP16.49■□□□□ 0.23
CPSF1-213ENST00000620219 TBKBP1A7MCY6 615 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 TKTL1P51854 596 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 CUL1Q13616 776 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 VCPIP1Q96JH7 1222 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 ZIM3Q96PE6 472 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 USP18Q9UMW8 372 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 BTNL10A8MVZ5 291 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 ERBB2P04626 1255 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 UNGP13051 313 aaPredicted RBP16.49■□□□□ 0.23
CPSF1-213ENST00000620219 PTPN1P18031 435 aaKnown RBP16.49■□□□□ 0.23
CPSF1-213ENST00000620219 PCBP1Q15365 356 aaKnown RBP eCLIP16.49■□□□□ 0.23
CPSF1-213ENST00000620219 TAF5Q15542 800 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 SMAD1Q15797 465 aaKnown RBP16.49■□□□□ 0.23
CPSF1-213ENST00000620219 MGAT5BQ3V5L5 792 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 FAM183BPQ6ZVS7 135 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 PRUNE1Q86TP1 453 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 B3GALNT2Q8NCR0 500 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 MED4Q9NPJ6 270 aa16.49■□□□□ 0.23
CPSF1-213ENST00000620219 FAM155AB1AL88 458 aaPredicted RBP16.48■□□□□ 0.23
CPSF1-213ENST00000620219 M0QYT0 321 aa16.48■□□□□ 0.23
CPSF1-213ENST00000620219 SRGAP2BP0DMP2 458 aa16.48■□□□□ 0.23
CPSF1-213ENST00000620219 ARSEP51690 589 aa16.48■□□□□ 0.23
CPSF1-213ENST00000620219 PHF13Q86YI8 300 aaPredicted RBP16.48■□□□□ 0.23
CPSF1-213ENST00000620219 TMEM106CQ9BVX2 250 aa16.48■□□□□ 0.23
CPSF1-213ENST00000620219 UNC93B1Q9H1C4 597 aa16.48■□□□□ 0.23
CPSF1-213ENST00000620219 DDX56Q9NY93 547 aaKnown RBP16.48■□□□□ 0.23
CPSF1-213ENST00000620219 TBK1Q9UHD2 729 aa16.48■□□□□ 0.23
CPSF1-213ENST00000620219 TULP2O00295 520 aa16.48■□□□□ 0.23
CPSF1-213ENST00000620219 DDX3YO15523 660 aaKnown RBP16.48■□□□□ 0.23
CPSF1-213ENST00000620219 HMBSP08397 361 aa16.48■□□□□ 0.23
CPSF1-213ENST00000620219 COILP38432 576 aaPredicted RBP16.48■□□□□ 0.23
CPSF1-213ENST00000620219 RAB27AP51159 221 aa16.48■□□□□ 0.23
CPSF1-213ENST00000620219 MON1BQ7L1V2 547 aa16.48■□□□□ 0.23
CPSF1-213ENST00000620219 LRRC52Q8N7C0 313 aa16.48■□□□□ 0.23
CPSF1-213ENST00000620219 DBF4BQ8NFT6 615 aa16.48■□□□□ 0.23
CPSF1-213ENST00000620219 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.48■□□□□ 0.234e-7■■■□□ 15.3
CPSF1-213ENST00000620219 ATP8B3O60423 1300 aa16.48■□□□□ 0.23
CPSF1-213ENST00000620219 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.48■□□□□ 0.23
CPSF1-213ENST00000620219 PROZP22891 400 aa16.48■□□□□ 0.23
CPSF1-213ENST00000620219 LMNB2Q03252 620 aa16.48■□□□□ 0.23
CPSF1-213ENST00000620219 YWHAHQ04917 246 aaPredicted RBP16.48■□□□□ 0.23
CPSF1-213ENST00000620219 MTMR3Q13615 1198 aa16.48■□□□□ 0.23
CPSF1-213ENST00000620219 BBS9Q3SYG4 887 aa16.48■□□□□ 0.23
CPSF1-213ENST00000620219 FAM171A1Q5VUB5 890 aa16.48■□□□□ 0.23
CPSF1-213ENST00000620219 PIGZQ86VD9 579 aa16.48■□□□□ 0.23
CPSF1-213ENST00000620219 ZNF784Q8NCA9 323 aaPredicted RBP16.48■□□□□ 0.23
CPSF1-213ENST00000620219 WHAMMQ8TF30 809 aa16.48■□□□□ 0.23
CPSF1-213ENST00000620219 DDX1Q92499 740 aaKnown RBP16.48■□□□□ 0.23
CPSF1-213ENST00000620219 PPANQ9NQ55 473 aaKnown RBP16.48■□□□□ 0.23
CPSF1-213ENST00000620219 CHST7Q9NS84 486 aa16.48■□□□□ 0.23
CPSF1-213ENST00000620219 HOMER3Q9NSC5 361 aa16.48■□□□□ 0.23
CPSF1-213ENST00000620219 TMEM39AQ9NV64 488 aa16.48■□□□□ 0.23
CPSF1-213ENST00000620219 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.48■□□□□ 0.232e-9■■■■■ 33.2
CPSF1-213ENST00000620219 SKIP12755 728 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 MAN1A1P33908 653 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 EIF3EP60228 445 aaKnown RBP16.47■□□□□ 0.23
CPSF1-213ENST00000620219 NNTQ13423 1086 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 BTBD8Q5XKL5 378 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 ADAM33Q9BZ11 813 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 PRM3Q9NNZ6 103 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 MAD1L1Q9Y6D9 718 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 POC1B-GALNT4F8VUJ3 575 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 MIPP30301 263 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 PBX3P40426 434 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 DEUP1Q05D60 604 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 TFDP2Q14188 446 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 HIC1Q14526 733 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 SOWAHAQ2M3V2 549 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 PMF1Q6P1K2 205 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 CTAGE3PQ8IX95 158 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 ATL2Q8NHH9 583 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 FBXO25Q8TCJ0 367 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.47■□□□□ 0.23
CPSF1-213ENST00000620219 PAPPA2Q9BXP8 1791 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 BYSLQ13895 437 aaKnown RBP16.47■□□□□ 0.23
CPSF1-213ENST00000620219 CCDC142Q17RM4 750 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 SPATA18Q8TC71 538 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 LRRN4Q8WUT4 740 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 ERP44Q9BS26 406 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 DDIT4Q9NX09 232 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 CHRNA1P02708 482 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 CYP1A1P04798 512 aaPredicted RBP16.47■□□□□ 0.23
CPSF1-213ENST00000620219 AFF1P51825 1210 aaKnown RBP16.47■□□□□ 0.23
CPSF1-213ENST00000620219 SOX4Q06945 474 aaPredicted RBP16.47■□□□□ 0.23
CPSF1-213ENST00000620219 MTFR1Q15390 333 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 CNPY3Q9BT09 278 aa16.47■□□□□ 0.23
CPSF1-213ENST00000620219 STK10O94804 968 aaKnown RBP16.46■□□□□ 0.23
CPSF1-213ENST00000620219 OR4Q2P0C623 313 aa16.46■□□□□ 0.23
CPSF1-213ENST00000620219 LHX1P48742 406 aa16.46■□□□□ 0.23
CPSF1-213ENST00000620219 ALDH7A1P49419 539 aaKnown RBP16.46■□□□□ 0.23
CPSF1-213ENST00000620219 ZNF268Q14587 947 aaPredicted RBP16.46■□□□□ 0.23
CPSF1-213ENST00000620219 PALM2Q8IXS6 379 aa16.46■□□□□ 0.23
CPSF1-213ENST00000620219 MICAL1Q8TDZ2 1067 aa16.46■□□□□ 0.23
CPSF1-213ENST00000620219 ARL8AQ96BM9 186 aa16.46■□□□□ 0.23
CPSF1-213ENST00000620219 RSPH14Q9UHP6 348 aa16.46■□□□□ 0.23
CPSF1-213ENST00000620219 RBP3P10745 1247 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms