RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 EPHA5P54756 1037 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 NTHL1P78549 312 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 ZXDAP98168 799 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 TSPY1Q01534 308 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 TBX2Q13207 712 aaPredicted RBP5.58□□□□□ -1.52
SHMT1-211ENST00000618902 TDGQ13569 410 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 NR1I3Q14994 352 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 MAN2A1Q16706 1144 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 CFAP221Q4G0U5 840 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 PABPC1LQ4VXU2 614 aaKnown RBP5.58□□□□□ -1.52
SHMT1-211ENST00000618902 VWA3BQ502W6 1294 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 SLC39A12Q504Y0 691 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 ZNF667Q5HYK9 610 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 INTS6LQ5JSJ4 861 aaKnown RBP5.58□□□□□ -1.52
SHMT1-211ENST00000618902 RARS2Q5T160 578 aaKnown RBP5.58□□□□□ -1.52
SHMT1-211ENST00000618902 CYP4A22Q5TCH4 519 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 PHLDB3Q6NSJ2 640 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 FAM171BQ6P995 826 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 TMC5Q6UXY8 1006 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 ZNF662Q6ZS27 426 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 TRIM67Q6ZTA4 783 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 TMC6Q7Z403 805 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 TMTC1Q8IUR5 882 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 CNGA4Q8IV77 575 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 CEP112Q8N8E3 955 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 STKLD1Q8NE28 680 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 SMG7Q92540 1137 aaKnown RBP5.58□□□□□ -1.52
SHMT1-211ENST00000618902 MYLPFQ96A32 169 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 EXOC4Q96A65 974 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 PGLYRP2Q96PD5 576 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 MMS19Q96T76 1030 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 NELL2Q99435 816 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 BAG1Q99933 345 aaPredicted RBP5.58□□□□□ -1.52
SHMT1-211ENST00000618902 SYT15Q9BQS2 421 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 ZSWIM1Q9BR11 485 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 TUBGCP2Q9BSJ2 902 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 B3GNT5Q9BYG0 378 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 OSBPL6Q9BZF3 934 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 NIF3L1Q9GZT8 377 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 VPS16Q9H269 839 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 NDST4Q9H3R1 872 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 PIDD1Q9HB75 910 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 TRPV4Q9HBA0 871 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 SLC2A4RGQ9NR83 387 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 DDX43Q9NXZ2 648 aaKnown RBP5.58□□□□□ -1.52
SHMT1-211ENST00000618902 OBP2AQ9NY56 170 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 UXTQ9UBK9 157 aaPredicted RBP5.58□□□□□ -1.52
SHMT1-211ENST00000618902 LIMA1Q9UHB6 759 aaKnown RBP5.58□□□□□ -1.52
SHMT1-211ENST00000618902 GTF3C4Q9UKN8 822 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 CDH7Q9ULB5 785 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 SLC27A5Q9Y2P5 690 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.58□□□□□ -1.52
SHMT1-211ENST00000618902 FAM186AA6NE01 2351 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 C2orf16Q68DN1 1984 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 PTPRDP23468 1912 aa5.58□□□□□ -1.52
SHMT1-211ENST00000618902 A0A1B0GTH6 734 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 AKR1B15C9JRZ8 316 aaPredicted RBP5.57□□□□□ -1.52
SHMT1-211ENST00000618902 ANHXE9PGG2 379 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 CLDN5O00501 218 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 STK25O00506 426 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 PRRG1O14668 218 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 P4HA2O15460 535 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 CCL16O15467 120 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 CILPO75339 1184 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 MOSPD3O75425 235 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 ERLIN1O75477 346 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 ECI2O75521 394 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 NOL4O94818 638 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 FGFR1OPO95684 399 aaKnown RBP5.57□□□□□ -1.52
SHMT1-211ENST00000618902 CCDC175P0C221 793 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 PNMA6AP0CW24 399 aaPredicted RBP5.57□□□□□ -1.52
SHMT1-211ENST00000618902 LAMP2P13473 410 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 CCDC130P13994 396 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 CPB1P15086 417 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 H2AFXP16104 143 aaPredicted RBP5.57□□□□□ -1.52
SHMT1-211ENST00000618902 PTPN1P18031 435 aaKnown RBP5.57□□□□□ -1.52
SHMT1-211ENST00000618902 ATF6P18850 670 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 CD58P19256 250 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 EEF1GP26641 437 aaKnown RBP5.57□□□□□ -1.52
SHMT1-211ENST00000618902 CASQ1P31415 396 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 GNL1P36915 607 aaPredicted RBP5.57□□□□□ -1.52
SHMT1-211ENST00000618902 ALDH1A3P47895 512 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 ZNF132P52740 706 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 RAD23BP54727 409 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 EPHB3P54753 998 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 RPL10AP62906 217 aaKnown RBP5.57□□□□□ -1.52
SHMT1-211ENST00000618902 TNNC1P63316 161 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 INCA1Q0VD86 236 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 DUSP4Q13115 394 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 CUL2Q13617 745 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 VEPH1Q14D04 833 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 BRD3Q15059 726 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 TSR1Q2NL82 804 aaKnown RBP5.57□□□□□ -1.52
SHMT1-211ENST00000618902 MDH1BQ5I0G3 518 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 SDHAF4Q5VUM1 108 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 TMCO3Q6UWJ1 677 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 VSTM1Q6UX27 236 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 C4orf50Q6ZRC1 276 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 RRAGAQ7L523 313 aa5.57□□□□□ -1.52
SHMT1-211ENST00000618902 ACOT1Q86TX2 421 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms