RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 CMTR2Q8IYT2 770 aaKnown RBP15.02■□□□□ -0
USP39-220ENST00000613444 FNIP1Q8TF40 1166 aa15.02■□□□□ -0
USP39-220ENST00000613444 UBE2Q2Q8WVN8 375 aa15.02■□□□□ -0
USP39-220ENST00000613444 KCTD13Q8WZ19 329 aa15.02■□□□□ -0
USP39-220ENST00000613444 MED10Q9BTT4 135 aa15.02■□□□□ -0
USP39-220ENST00000613444 MIS12Q9H081 205 aa15.02■□□□□ -0
USP39-220ENST00000613444 HHLA1C9JL84 531 aa15.02□□□□□ -0.01
USP39-220ENST00000613444 CES2O00748 559 aa15.02□□□□□ -0.01
USP39-220ENST00000613444 TBC1D4O60343 1298 aa15.02□□□□□ -0.01
USP39-220ENST00000613444 FGBP02675 491 aa15.02□□□□□ -0.01
USP39-220ENST00000613444 MAN1A1P33908 653 aa15.02□□□□□ -0.01
USP39-220ENST00000613444 SLC1A1P43005 524 aa15.02□□□□□ -0.01
USP39-220ENST00000613444 ALDH7A1P49419 539 aaKnown RBP15.02□□□□□ -0.01
USP39-220ENST00000613444 TERF1P54274 439 aa15.02□□□□□ -0.01
USP39-220ENST00000613444 TSPY1Q01534 308 aa15.02□□□□□ -0.01
USP39-220ENST00000613444 RTP2Q5QGT7 225 aa15.02□□□□□ -0.01
USP39-220ENST00000613444 TMEM240Q5SV17 173 aa15.02□□□□□ -0.01
USP39-220ENST00000613444 OR6B2Q6IFH4 312 aa15.02□□□□□ -0.01
USP39-220ENST00000613444 DCUN1D2Q6PH85 259 aa15.02□□□□□ -0.01
USP39-220ENST00000613444 NIPA2Q8N8Q9 360 aa15.02□□□□□ -0.01
USP39-220ENST00000613444 CLEC4CQ8WTT0 213 aa15.02□□□□□ -0.01
USP39-220ENST00000613444 CAPZA3Q96KX2 299 aa15.02□□□□□ -0.01
USP39-220ENST00000613444 KCNK16Q96T55 309 aa15.02□□□□□ -0.01
USP39-220ENST00000613444 CXXC1Q9P0U4 656 aaPredicted RBP15.02□□□□□ -0.01
USP39-220ENST00000613444 IP6K2Q9UHH9 426 aa15.02□□□□□ -0.01
USP39-220ENST00000613444 MRPL42Q9Y6G3 142 aaKnown RBP15.02□□□□□ -0.01
USP39-220ENST00000613444 MIF4GDA9UHW6 222 aaKnown RBP15.01□□□□□ -0.01
USP39-220ENST00000613444 KCNK3O14649 394 aa15.01□□□□□ -0.01
USP39-220ENST00000613444 AP1G2O75843 785 aa15.01□□□□□ -0.01
USP39-220ENST00000613444 OR4Q2P0C623 313 aa15.01□□□□□ -0.01
USP39-220ENST00000613444 CTNNA2P26232 953 aa15.01□□□□□ -0.01
USP39-220ENST00000613444 CTNNA1P35221 906 aaKnown RBP15.01□□□□□ -0.01
USP39-220ENST00000613444 GTF2F1P35269 517 aaKnown RBP eCLIP15.01□□□□□ -0.01
USP39-220ENST00000613444 ACADSBP45954 432 aa15.01□□□□□ -0.01
USP39-220ENST00000613444 RABGGTBP53611 331 aa15.01□□□□□ -0.01
USP39-220ENST00000613444 MAP3K7CLP57077 242 aa15.01□□□□□ -0.01
USP39-220ENST00000613444 SLC6A3Q01959 620 aa15.01□□□□□ -0.01
USP39-220ENST00000613444 ELAVL2Q12926 359 aaKnown RBP15.01□□□□□ -0.01
USP39-220ENST00000613444 TAF5Q15542 800 aa15.01□□□□□ -0.01
USP39-220ENST00000613444 MAPRE1Q15691 268 aaKnown RBP15.01□□□□□ -0.01
USP39-220ENST00000613444 FAM102AQ5T9C2 384 aaPredicted RBP15.01□□□□□ -0.01
USP39-220ENST00000613444 KCNT2Q6UVM3 1135 aa15.01□□□□□ -0.01
USP39-220ENST00000613444 ZDHHC17Q8IUH5 632 aa15.01□□□□□ -0.01
USP39-220ENST00000613444 EMC1Q8N766 993 aa15.01□□□□□ -0.01
USP39-220ENST00000613444 SMARCD1Q96GM5 515 aa15.01□□□□□ -0.01
USP39-220ENST00000613444 IGSF21Q96ID5 467 aa15.01□□□□□ -0.01
USP39-220ENST00000613444 MS4A14Q96JA4 679 aa15.01□□□□□ -0.01
USP39-220ENST00000613444 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.01□□□□□ -0.013e-12■■□□□ 13.8
USP39-220ENST00000613444 UBXN6Q9BZV1 441 aa15.01□□□□□ -0.01
USP39-220ENST00000613444 EHD2Q9NZN4 543 aa15.01□□□□□ -0.01
USP39-220ENST00000613444 PCDHA3Q9Y5H8 950 aa15.01□□□□□ -0.01
USP39-220ENST00000613444 F8VP50 259 aa15.01□□□□□ -0.01
USP39-220ENST00000613444 CTIFO43310 598 aaKnown RBP15.01□□□□□ -0.01
USP39-220ENST00000613444 SPOPO43791 374 aa15.01□□□□□ -0.01
USP39-220ENST00000613444 BDNFP23560 247 aa15.01□□□□□ -0.01
USP39-220ENST00000613444 HTRA4P83105 476 aaPredicted RBP15.01□□□□□ -0.01
USP39-220ENST00000613444 ADCY1Q08828 1119 aa15.01□□□□□ -0.01
USP39-220ENST00000613444 RAB41Q5JT25 222 aa15.01□□□□□ -0.01
USP39-220ENST00000613444 RSPO2Q6UXX9 243 aaPredicted RBP15.01□□□□□ -0.01
USP39-220ENST00000613444 ZNF572Q7Z3I7 529 aaPredicted RBP15.01□□□□□ -0.01
USP39-220ENST00000613444 CEP57Q86XR8 500 aa15.01□□□□□ -0.01
USP39-220ENST00000613444 SMARCAL1Q9NZC9 954 aa15.01□□□□□ -0.01
USP39-220ENST00000613444 C2CD4BA6NLJ0 364 aa15□□□□□ -0.01
USP39-220ENST00000613444 TADA3O75528 432 aa15□□□□□ -0.01
USP39-220ENST00000613444 GJB5O95377 273 aa15□□□□□ -0.01
USP39-220ENST00000613444 LINC00271P0C7V0 271 aa15□□□□□ -0.01
USP39-220ENST00000613444 LCP1P13796 627 aa15□□□□□ -0.01
USP39-220ENST00000613444 FLT3P36888 993 aa15□□□□□ -0.01
USP39-220ENST00000613444 SCNN1AP37088 669 aa15□□□□□ -0.01
USP39-220ENST00000613444 SLC8A3P57103 927 aa15□□□□□ -0.01
USP39-220ENST00000613444 SNX16P57768 344 aa15□□□□□ -0.01
USP39-220ENST00000613444 TAS2R40P59535 323 aa15□□□□□ -0.01
USP39-220ENST00000613444 BTG3Q14201 252 aaPredicted RBP15□□□□□ -0.01
USP39-220ENST00000613444 PIGHQ14442 188 aaPredicted RBP15□□□□□ -0.01
USP39-220ENST00000613444 GPRIN1Q7Z2K8 1008 aa15□□□□□ -0.01
USP39-220ENST00000613444 SLC39A11Q8N1S5 342 aa15□□□□□ -0.01
USP39-220ENST00000613444 ARFGAP1Q8N6T3 406 aa15□□□□□ -0.01
USP39-220ENST00000613444 GADD45GIP1Q8TAE8 222 aaPredicted RBP15□□□□□ -0.01
USP39-220ENST00000613444 PBKQ96KB5 322 aa15□□□□□ -0.01
USP39-220ENST00000613444 LCMT1Q9UIC8 334 aa15□□□□□ -0.01
USP39-220ENST00000613444 CCDC66A2RUB6 948 aa15□□□□□ -0.01
USP39-220ENST00000613444 TCF4P15884 667 aa15□□□□□ -0.01
USP39-220ENST00000613444 SYN1P17600 705 aa15□□□□□ -0.01
USP39-220ENST00000613444 NDUFV1P49821 464 aa15□□□□□ -0.01
USP39-220ENST00000613444 ADIGQ0VDE8 80 aa15□□□□□ -0.01
USP39-220ENST00000613444 CTXN3Q4LDR2 81 aa15□□□□□ -0.01
USP39-220ENST00000613444 SLC39A12Q504Y0 691 aa15□□□□□ -0.01
USP39-220ENST00000613444 SLC26A9Q7LBE3 791 aa15□□□□□ -0.01
USP39-220ENST00000613444 RASGEF1CQ8N431 466 aa15□□□□□ -0.01
USP39-220ENST00000613444 CEP112Q8N8E3 955 aa15□□□□□ -0.01
USP39-220ENST00000613444 TTPALQ9BTX7 342 aa15□□□□□ -0.01
USP39-220ENST00000613444 CARD9Q9H257 536 aa15□□□□□ -0.01
USP39-220ENST00000613444 CHST7Q9NS84 486 aa15□□□□□ -0.01
USP39-220ENST00000613444 GREB1Q4ZG55 1949 aa14.99□□□□□ -0.01
USP39-220ENST00000613444 COL4A4P53420 1690 aaPredicted RBP14.99□□□□□ -0.01
USP39-220ENST00000613444 ZNF638Q14966 1978 aaKnown RBP14.99□□□□□ -0.01
USP39-220ENST00000613444 OR6C75A6NL08 312 aa14.99□□□□□ -0.01
USP39-220ENST00000613444 ZBBXA8MT70 800 aa14.99□□□□□ -0.01
USP39-220ENST00000613444 GRAP2O75791 330 aa14.99□□□□□ -0.01
USP39-220ENST00000613444 ZNF280DQ6N043 979 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms