RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 MAP1BP46821 2468 aaKnown RBP9.08□□□□□ -0.96
TTC28-208ENST00000612946 E5RI56 91 aa9.08□□□□□ -0.96
TTC28-208ENST00000612946 PRKAA1Q13131 559 aa9.08□□□□□ -0.96
TTC28-208ENST00000612946 HABP4Q5JVS0 413 aaKnown RBP9.08□□□□□ -0.96
TTC28-208ENST00000612946 FBXO11Q86XK2 927 aa9.08□□□□□ -0.96
TTC28-208ENST00000612946 RIN2Q8WYP3 895 aaPredicted RBP9.08□□□□□ -0.96
TTC28-208ENST00000612946 GNPTGQ9UJJ9 305 aa9.08□□□□□ -0.96
TTC28-208ENST00000612946 DBR1Q9UK59 544 aaKnown RBP9.08□□□□□ -0.96
TTC28-208ENST00000612946 GDAQ9Y2T3 454 aa9.08□□□□□ -0.96
TTC28-208ENST00000612946 TNFRSF21O75509 655 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 PENKP01210 267 aaPredicted RBP9.07□□□□□ -0.96
TTC28-208ENST00000612946 PFKFB3Q16875 520 aaPredicted RBP9.07□□□□□ -0.96
TTC28-208ENST00000612946 ANKS3Q6ZW76 656 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 TMCO6Q96DC7 493 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 CCSER2Q9H7U1 834 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 LRRC4Q9HBW1 653 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 OLA1Q9NTK5 396 aaKnown RBP9.07□□□□□ -0.96
TTC28-208ENST00000612946 FADS3Q9Y5Q0 445 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 ZNF185O15231 689 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 RFC4P35249 363 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 PDK1Q15118 436 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 DEFB107AQ8IZN7 70 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 ITPKCQ96DU7 683 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 NGLY1Q96IV0 654 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 KLHL32Q96NJ5 620 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 UBP1Q9NZI7 540 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 TEX33O43247 280 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 PCSK2P16519 638 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 SLC5A9Q2M3M2 681 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 DGKHQ86XP1 1220 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 ZFYVE1Q9HBF4 777 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 NCKIPSDQ9NZQ3 722 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 IFNA7P01567 189 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 ITGAXP20702 1163 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 RPS6P62753 249 aaKnown RBP9.07□□□□□ -0.96
TTC28-208ENST00000612946 GPKOWQ92917 476 aaPredicted RBP eCLIP9.07□□□□□ -0.96
TTC28-208ENST00000612946 NIP7Q9Y221 180 aaKnown RBP eCLIP9.07□□□□□ -0.96
TTC28-208ENST00000612946 SPEF1Q9Y4P9 236 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 TSPOAP1O95153 1857 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 GRK3P35626 688 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 IST1P53990 364 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 ADHFE1Q8IWW8 467 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 DPP10Q8N608 796 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 SCFD2Q8WU76 684 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 SLC25A23Q9BV35 468 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 SEC31BQ9NQW1 1179 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 MLXQ9UH92 298 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 AP3S2P59780 193 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 BNIP2Q12982 314 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 RAD9BQ6WBX8 426 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 RBM44Q6ZP01 1051 aaKnown RBP9.07□□□□□ -0.96
TTC28-208ENST00000612946 EIF3MQ7L2H7 374 aaKnown RBP9.07□□□□□ -0.96
TTC28-208ENST00000612946 C4orf33Q8N1A6 199 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 RAB2BQ8WUD1 216 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 DHX36Q9H2U1 1008 aaKnown RBP9.07□□□□□ -0.96
TTC28-208ENST00000612946 MRPL39Q9NYK5 338 aaKnown RBP9.07□□□□□ -0.96
TTC28-208ENST00000612946 METTL21EPA6NDL7 271 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 LOC110117498-PIK3R3F6TDL0 507 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 FAM228BP0C875 321 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 CCNCP24863 283 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 CAPGP40121 348 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 TIMM10P62072 90 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 MROH9Q5TGP6 573 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 G2E3Q7L622 706 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 PI4K2BQ8TCG2 481 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 PIK3R3Q92569 461 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 FAM20AQ96MK3 541 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.07□□□□□ -0.96
TTC28-208ENST00000612946 SERPINE1P05121 402 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 TCF4P15884 667 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 EPHB2P29323 1055 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 ALDH1A3P47895 512 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 EIF3EP60228 445 aaKnown RBP9.07□□□□□ -0.96
TTC28-208ENST00000612946 RNFT2Q96EX2 444 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 KCTD14Q9BQ13 255 aaPredicted RBP9.07□□□□□ -0.96
TTC28-208ENST00000612946 DCUN1D5Q9BTE7 237 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 MARCOQ9UEW3 520 aaPredicted RBP9.07□□□□□ -0.96
TTC28-208ENST00000612946 PREX2Q70Z35 1606 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 ZNF197O14709 1029 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 QARSP47897 775 aaKnown RBP9.07□□□□□ -0.96
TTC28-208ENST00000612946 CTSWP56202 376 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 PABPC4Q13310 644 aaKnown RBP eCLIP9.07□□□□□ -0.96
TTC28-208ENST00000612946 MTF1Q14872 753 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 EPC2Q52LR7 807 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 EFHC2Q5JST6 749 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 AGAP9Q5VTM2 703 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 TBC1D19Q8N5T2 526 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 ARL10Q8N8L6 244 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 AVENQ9NQS1 362 aaPredicted RBP9.07□□□□□ -0.96
TTC28-208ENST00000612946 SLC12A4Q9UP95 1085 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 SNX9Q9Y5X1 595 aa9.07□□□□□ -0.96
TTC28-208ENST00000612946 GUCA1CO95843 209 aa9.06□□□□□ -0.96
TTC28-208ENST00000612946 MYL12AP19105 171 aa9.06□□□□□ -0.96
TTC28-208ENST00000612946 FRG1Q14331 258 aaKnown RBP9.06□□□□□ -0.96
TTC28-208ENST00000612946 CENPLQ8N0S6 344 aaPredicted RBP9.06□□□□□ -0.96
TTC28-208ENST00000612946 SH3BP4Q9P0V3 963 aa9.06□□□□□ -0.96
TTC28-208ENST00000612946 PCDHGA3Q9Y5H0 932 aa9.06□□□□□ -0.96
TTC28-208ENST00000612946 UNC13BO14795 1591 aa9.06□□□□□ -0.96
TTC28-208ENST00000612946 KDM6AO15550 1401 aaPredicted RBP9.06□□□□□ -0.96
TTC28-208ENST00000612946 NUDT17P0C025 328 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms