RNA–Protein interactions for RNA: ENST00000612856.4

FAM3A-221, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 2

Gene FAM3A, Length 3,995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-221ENST00000612856 GOLGA7BQ2TAP0 167 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 ISLR2Q6UXK2 745 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 OR5B17Q8NGF7 314 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 ZNF507Q8TCN5 953 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 EPS8L3Q8TE67 593 aaKnown RBP11.33□□□□□ -0.6
FAM3A-221ENST00000612856 SMC6Q96SB8 1091 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 SMCHD1A6NHR9 2005 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 FAM47DPA6NHR8 397 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 DFFAO00273 331 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 ZBED1O96006 694 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 BRCC3P46736 316 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 SLC12A3P55017 1021 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 MRPS35P82673 323 aaKnown RBP11.33□□□□□ -0.6
FAM3A-221ENST00000612856 CBWD6Q4V339 395 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 MDH1BQ5I0G3 518 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 CBWD3Q5JTY5 395 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 CBWD5Q5RIA9 395 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 PPP1R15BQ5SWA1 713 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 TAF2Q6P1X5 1199 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 SPATA21Q7Z572 469 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 NETO2Q8NC67 525 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 ZSWIM2Q8NEG5 633 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 DBF4BQ8NFT6 615 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 RDM1Q8NG50 284 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 TGS1Q96RS0 853 aaKnown RBP11.33□□□□□ -0.6
FAM3A-221ENST00000612856 FAM129AQ9BZQ8 928 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 RNF186Q9NXI6 227 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 UBQLN1Q9UMX0 589 aaKnown RBP11.33□□□□□ -0.6
FAM3A-221ENST00000612856 SPTA1P02549 2419 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 SMNDC1O75940 238 aaKnown RBP eCLIP11.33□□□□□ -0.6
FAM3A-221ENST00000612856 NFICP08651 508 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 ETS2P15036 469 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 ARF4P18085 180 aaPredicted RBP11.33□□□□□ -0.6
FAM3A-221ENST00000612856 KCNJ1P48048 391 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 ROR2Q01974 943 aaKnown RBP11.33□□□□□ -0.6
FAM3A-221ENST00000612856 PDE1CQ14123 709 aaPredicted RBP11.33□□□□□ -0.6
FAM3A-221ENST00000612856 PDXDC1Q6P996 788 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 FAM131BQ86XD5 332 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 GSDMBQ8TAX9 411 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 RSAD1Q9HA92 442 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 TMEM8AQ9HCN3 771 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 DCTN4Q9UJW0 460 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 SLC27A5Q9Y2P5 690 aa11.33□□□□□ -0.6
FAM3A-221ENST00000612856 ARHGEF37A1IGU5 675 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 MYL4P12829 197 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 RABGGTBP53611 331 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 BYSLQ13895 437 aaKnown RBP11.32□□□□□ -0.6
FAM3A-221ENST00000612856 EDRF1Q3B7T1 1238 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 DCAF4L1Q3SXM0 396 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 RASAL3Q86YV0 1011 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 PDCD7Q8N8D1 485 aaKnown RBP11.32□□□□□ -0.6
FAM3A-221ENST00000612856 ARL10Q8N8L6 244 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 CEP70Q8NHQ1 597 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 CFAP61Q8NHU2 1237 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 BSNDQ8WZ55 320 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 CISHQ9NSE2 258 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 KLHL8Q9P2G9 620 aaPredicted RBP11.32□□□□□ -0.6
FAM3A-221ENST00000612856 WRAP73Q9P2S5 460 aaPredicted RBP11.32□□□□□ -0.6
FAM3A-221ENST00000612856 PLAGL2Q9UPG8 496 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 RIF1Q5UIP0 2472 aaKnown RBP11.32□□□□□ -0.6
FAM3A-221ENST00000612856 ACKR2O00590 384 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 MCF2LO15068 1137 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 AHCYL1O43865 530 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 ETFBP38117 255 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 ITIH3Q06033 890 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 AP1B1Q10567 949 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 CST9Q5W186 159 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 C18orf25Q96B23 403 aaPredicted RBP11.32□□□□□ -0.6
FAM3A-221ENST00000612856 EPAS1Q99814 870 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 GDF3Q9NR23 364 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 KCNA2P16389 499 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 PON1P27169 355 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 GJA5P36382 358 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 HSPA9P38646 679 aaKnown RBP11.32□□□□□ -0.6
FAM3A-221ENST00000612856 ALDH1A3P47895 512 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 SLC26A2P50443 739 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 HSD17B4P51659 736 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 PPP3CAQ08209 521 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 FBXO47Q5MNV8 452 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 LLGL2Q6P1M3 1020 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 C6orf89Q6UWU4 347 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 LRIG3Q6UXM1 1119 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 LRRC55Q6ZSA7 311 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 MFN1Q8IWA4 741 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 GBP7Q8N8V2 638 aaPredicted RBP11.32□□□□□ -0.6
FAM3A-221ENST00000612856 MAIP1Q8WWC4 291 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 DDX43Q9NXZ2 648 aaKnown RBP11.32□□□□□ -0.6
FAM3A-221ENST00000612856 CHMP2BQ9UQN3 213 aa11.32□□□□□ -0.6
FAM3A-221ENST00000612856 NCOR1O75376 2440 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 ECM29Q5VYK3 1845 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 THSD7AQ9UPZ6 1657 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 PLIN4Q96Q06 1357 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 MMP3P08254 477 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 OR4Q2P0C623 313 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 BRAFP15056 766 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 ABCD1P33897 745 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 EIF3BP55884 814 aaKnown RBP11.31□□□□□ -0.6
FAM3A-221ENST00000612856 MAP7Q14244 749 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 FAM182AQ5T1J6 154 aa11.31□□□□□ -0.6
FAM3A-221ENST00000612856 C6orf163Q5TEZ5 329 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms