RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 ELMO3Q96BJ8 720 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 SHDQ96IW2 340 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 ANKRD36BP1Q96IX9 119 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 ASB16Q96NS5 453 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 LRRC3BQ96PB8 259 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 ERGIC2Q96RQ1 377 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 VPS16Q9H269 839 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 RAB20Q9NX57 234 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 GDE1Q9NZC3 331 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 SIK3Q9Y2K2 1263 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 NME7Q9Y5B8 376 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 KIF26AQ9ULI4 1882 aaPredicted RBP9.34□□□□□ -0.91
TRIM28-214ENST00000600840 FRYLO94915 3013 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 KPNA7A9QM74 516 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 NOL4O94818 638 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 CYP11A1P05108 521 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 FAM163BP0C2L3 166 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 TYMPP19971 482 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 PAX3P23760 479 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 PON1P27169 355 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 APBA1Q02410 837 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 GPR17Q13304 367 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 SOWAHAQ2M3V2 549 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 SGSM1Q2NKQ1 1148 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 WDR44Q5JSH3 913 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 OVOS1Q6IE37 1185 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 PRR23CQ6ZRP0 262 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 PRR23BQ6ZRT6 265 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 TPRG1Q6ZUI0 275 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 PDZD4Q76G19 769 aaPredicted RBP9.34□□□□□ -0.91
TRIM28-214ENST00000600840 USP37Q86T82 979 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 LRRTM3Q86VH5 581 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 ZNF687Q8N1G0 1237 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 STKLD1Q8NE28 680 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 TAF4BQ92750 862 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 ELSPBP1Q96BH3 223 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 HPDLQ96IR7 371 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 FAXDC2Q96IV6 333 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 ZNF512Q96ME7 567 aaPredicted RBP9.34□□□□□ -0.91
TRIM28-214ENST00000600840 PI4K2AQ9BTU6 479 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 SDCBP2Q9H190 292 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 ZFP14Q9HCL3 533 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 PRMT8Q9NR22 394 aaPredicted RBP9.34□□□□□ -0.91
TRIM28-214ENST00000600840 SEMA4GQ9NTN9 838 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 MAGEC2Q9UBF1 373 aaPredicted RBP9.34□□□□□ -0.91
TRIM28-214ENST00000600840 DENND4CQ5VZ89 1909 aa9.34□□□□□ -0.91
TRIM28-214ENST00000600840 WDR87Q6ZQQ6 2873 aa9.34□□□□□ -0.92
TRIM28-214ENST00000600840 CHD8Q9HCK8 2581 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 A0A1W2PRU2 124 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 C1QTNF9BB2RNN3 333 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 GABRDO14764 452 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 EPHB6O15197 1021 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 MICAL2O94851 1124 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 C1QTNF9P0C862 333 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 PRKCSHP14314 528 aaPredicted RBP9.33□□□□□ -0.92
TRIM28-214ENST00000600840 CDK11BP21127 795 aaKnown RBP9.33□□□□□ -0.92
TRIM28-214ENST00000600840 ACO1P21399 889 aaKnown RBP9.33□□□□□ -0.92
TRIM28-214ENST00000600840 HOXC13P31276 330 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 ASPAP45381 313 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 TAF6P49848 677 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 KLK7P49862 253 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 PRKCQQ04759 706 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 MTAPQ13126 283 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 SRSF5Q13243 272 aaKnown RBP9.33□□□□□ -0.92
TRIM28-214ENST00000600840 CCDC142Q17RM4 750 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 HS1BP3Q53T59 392 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 WSCD1Q658N2 575 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 SPOPLQ6IQ16 392 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 TRIM65Q6PJ69 517 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 GAREM2Q75VX8 874 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 DPH6Q7L8W6 267 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 ZSCAN18Q8TBC5 510 aaPredicted RBP9.33□□□□□ -0.92
TRIM28-214ENST00000600840 WHAMMQ8TF30 809 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 KBTBD7Q8WVZ9 684 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 SMARCD2Q92925 531 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 TRIM44Q96DX7 344 aaPredicted RBP9.33□□□□□ -0.92
TRIM28-214ENST00000600840 LPIN3Q9BQK8 851 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 CRACR2AQ9BSW2 395 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 NAA15Q9BXJ9 866 aaKnown RBP9.33□□□□□ -0.92
TRIM28-214ENST00000600840 INTS2Q9H0H0 1204 aaKnown RBP9.33□□□□□ -0.92
TRIM28-214ENST00000600840 GANQ9H2C0 597 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 MMRN2Q9H8L6 949 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 PLCB1Q9NQ66 1216 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 TMLHEQ9NVH6 421 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 AJAP1Q9UKB5 411 aaPredicted RBP9.33□□□□□ -0.92
TRIM28-214ENST00000600840 F5P12259 2224 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 CHD6Q8TD26 2715 aa9.33□□□□□ -0.92
TRIM28-214ENST00000600840 OBSL1O75147 1896 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 NUP210Q8TEM1 1887 aaPredicted RBP9.32□□□□□ -0.92
TRIM28-214ENST00000600840 A0A1W2PQC6 194 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 OR6C75A6NL08 312 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 HEPACAM2A8MVW5 462 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 GOLGA6L19H0YKK7 550 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 RNF225M0QZC1 329 aaPredicted RBP9.32□□□□□ -0.92
TRIM28-214ENST00000600840 ARNTLO00327 626 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 CYB561D2O14569 222 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 ZNF197O14709 1029 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 HCRTO43612 131 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 TACC1O75410 805 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 PROS1P07225 676 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms