RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 MYL1P05976 194 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 RETP07949 1114 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 PFKFB1P16118 471 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 PTPN1P18031 435 aaKnown RBP10.44□□□□□ -0.74
VRK3-216ENST00000599342 HOXA6P31267 233 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 GJA4P35212 333 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 CASP4P49662 377 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 MYL6P60660 151 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 NOP14P78316 857 aaKnown RBP10.44□□□□□ -0.74
VRK3-216ENST00000599342 KRT85P78386 507 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 ARHGAP8P85298 464 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 SPEM2Q0P670 501 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 IFRD2Q12894 506 aaPredicted RBP10.44□□□□□ -0.74
VRK3-216ENST00000599342 PSMD2Q13200 908 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 SRSF5Q13243 272 aaKnown RBP10.44□□□□□ -0.74
VRK3-216ENST00000599342 KMT5BQ4FZB7 885 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 FBXO43Q4G163 708 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 ZNF667Q5HYK9 610 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 TDRD10Q5VZ19 366 aaKnown RBP10.44□□□□□ -0.74
VRK3-216ENST00000599342 FSTL4Q6MZW2 842 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 WDR5BQ86VZ2 330 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 B3GALNT2Q8NCR0 500 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 ZNF516Q92618 1163 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 CD101Q93033 1021 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 CCDC47Q96A33 483 aaKnown RBP10.44□□□□□ -0.74
VRK3-216ENST00000599342 PAGE5Q96GU1 130 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 SPATA32Q96LK8 384 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 C8orf48Q96LL4 319 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 SLITRK1Q96PX8 696 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 TTLL2Q9BWV7 592 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 DPEP3Q9H4B8 488 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 C2orf42Q9NWW7 574 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 DLL3Q9NYJ7 618 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 GCNT4Q9P109 453 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 USP25Q9UHP3 1055 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 ARHGAP26Q9UNA1 814 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 DENND4CQ5VZ89 1909 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 F5P12259 2224 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 A0A1B0GVL5 298 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 LRRIQ3A6PVS8 624 aaPredicted RBP10.43□□□□□ -0.74
VRK3-216ENST00000599342 HRO43593 1189 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 KLRC4O43908 158 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 LRP3O75074 770 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 KIF20AO95235 890 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 NFATC1O95644 943 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 CCDC192P0DO97 292 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 P4HA1P13674 534 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 TCF3P15923 654 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 CMA1P23946 247 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 GALK1P51570 392 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 USP46P62068 366 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 STK4Q13043 487 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 NCOA4Q13772 614 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 EML3Q32P44 896 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 SCARA5Q6ZMJ2 495 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 KIAA0895Q8NCT3 520 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 CCDC26Q8TAB7 109 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 PARD3BQ8TEW8 1205 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 CHFRQ96EP1 664 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 TNIP3Q96KP6 325 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 MED10Q9BTT4 135 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 ZNF518BQ9C0D4 1074 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 GZF1Q9H116 711 aaPredicted RBP10.43□□□□□ -0.74
VRK3-216ENST00000599342 XYLT2Q9H1B5 865 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 VRTNQ9H8Y1 702 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 FRMD4BQ9Y2L6 1034 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 NME7Q9Y5B8 376 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 RIF1Q5UIP0 2472 aaKnown RBP10.43□□□□□ -0.74
VRK3-216ENST00000599342 ZNF638Q14966 1978 aaKnown RBP10.43□□□□□ -0.74
VRK3-216ENST00000599342 DCHS1Q96JQ0 3298 aa10.43□□□□□ -0.74
VRK3-216ENST00000599342 CCDC163A0A0D9SF12 145 aa10.42□□□□□ -0.74
VRK3-216ENST00000599342 ZNF840PA6NDX5 716 aa10.42□□□□□ -0.74
VRK3-216ENST00000599342 LEFTY2O00292 366 aa10.42□□□□□ -0.74
VRK3-216ENST00000599342 CLDN5O00501 218 aa10.42□□□□□ -0.74
VRK3-216ENST00000599342 PDXKO00764 312 aa10.42□□□□□ -0.74
VRK3-216ENST00000599342 CALUO43852 315 aaPredicted RBP10.42□□□□□ -0.74
VRK3-216ENST00000599342 RTN3O95197 1032 aaPredicted RBP10.42□□□□□ -0.74
VRK3-216ENST00000599342 NR3C1P04150 777 aa10.42□□□□□ -0.74
VRK3-216ENST00000599342 RPN1P04843 607 aaKnown RBP10.42□□□□□ -0.74
VRK3-216ENST00000599342 TRIM21P19474 475 aaKnown RBP10.42□□□□□ -0.74
VRK3-216ENST00000599342 SYKP43405 635 aa10.42□□□□□ -0.74
VRK3-216ENST00000599342 RAP1GAPP47736 663 aa10.42□□□□□ -0.74
VRK3-216ENST00000599342 TAF10Q12962 218 aa10.42□□□□□ -0.74
VRK3-216ENST00000599342 CEP135Q66GS9 1140 aa10.42□□□□□ -0.74
VRK3-216ENST00000599342 PKN3Q6P5Z2 889 aa10.42□□□□□ -0.74
VRK3-216ENST00000599342 DDX42Q86XP3 938 aaKnown RBP eCLIP10.42□□□□□ -0.74
VRK3-216ENST00000599342 SLC9A9Q8IVB4 645 aa10.42□□□□□ -0.74
VRK3-216ENST00000599342 NUP93Q8N1F7 819 aa10.42□□□□□ -0.74
VRK3-216ENST00000599342 CAMKK1Q8N5S9 505 aa10.42□□□□□ -0.74
VRK3-216ENST00000599342 PDZD8Q8NEN9 1154 aa10.42□□□□□ -0.74
VRK3-216ENST00000599342 RPLP0P6Q8NHW5 317 aa10.42□□□□□ -0.74
VRK3-216ENST00000599342 PLEKHO2Q8TD55 490 aa10.42□□□□□ -0.74
VRK3-216ENST00000599342 ACDQ96AP0 544 aa10.42□□□□□ -0.74
VRK3-216ENST00000599342 SMARCD1Q96GM5 515 aa10.42□□□□□ -0.74
VRK3-216ENST00000599342 B3GNT5Q9BYG0 378 aa10.42□□□□□ -0.74
VRK3-216ENST00000599342 SMYD3Q9H7B4 428 aa10.42□□□□□ -0.74
VRK3-216ENST00000599342 PARD6AQ9NPB6 346 aa10.42□□□□□ -0.74
VRK3-216ENST00000599342 SEMA4GQ9NTN9 838 aa10.42□□□□□ -0.74
VRK3-216ENST00000599342 SMPD4Q9NXE4 827 aa10.42□□□□□ -0.74
VRK3-216ENST00000599342 ATP6V1DQ9Y5K8 247 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms