RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 LAMA1P25391 3075 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 GOLGA8IPA6NC78 632 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 C2orf78A6NCI8 922 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 GOLGA8JA6NMD2 632 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 TULP1O00294 542 aaPredicted RBP13.38□□□□□ -0.27
TRIM28-212ENST00000597995 NFATC1O95644 943 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 TMEM191BP0C7N4 346 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 PDIA4P13667 645 aaKnown RBP13.38□□□□□ -0.27
TRIM28-212ENST00000597995 HOXD13P35453 343 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 PPP3CCP48454 512 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 DGKEP52429 567 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 CREB5Q02930 508 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 SURF1Q15526 300 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 SCARA3Q6AZY7 606 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 RASSF3Q86WH2 238 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 GPD1LQ8N335 351 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 TSTD1Q8NFU3 115 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 USP33Q8TEY7 942 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 DHX58Q96C10 678 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 ANKRD36BP1Q96IX9 119 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 SYT15Q9BQS2 421 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 CBWD1Q9BRT8 395 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 TRIM9Q9C026 710 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 MTMR12Q9C0I1 747 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 TNMDQ9H2S6 317 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 LINC00597Q9H2U6 94 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 INTS13Q9NVM9 706 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 RCOR1Q9UKL0 485 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 CDH9Q9ULB4 789 aa13.38□□□□□ -0.27
TRIM28-212ENST00000597995 DCLK1O15075 740 aa13.37□□□□□ -0.27
TRIM28-212ENST00000597995 HCRTO43612 131 aa13.37□□□□□ -0.27
TRIM28-212ENST00000597995 PRPF6O94906 941 aaKnown RBP13.37□□□□□ -0.27
TRIM28-212ENST00000597995 FAM163BP0C2L3 166 aa13.37□□□□□ -0.27
TRIM28-212ENST00000597995 WARSP23381 471 aaKnown RBP13.37□□□□□ -0.27
TRIM28-212ENST00000597995 CASP1P29466 404 aa13.37□□□□□ -0.27
TRIM28-212ENST00000597995 OPRD1P41143 372 aa13.37□□□□□ -0.27
TRIM28-212ENST00000597995 CCDC142Q17RM4 750 aa13.37□□□□□ -0.27
TRIM28-212ENST00000597995 DAB2IPQ5VWQ8 1189 aa13.37□□□□□ -0.27
TRIM28-212ENST00000597995 PMS2CLQ68D20 193 aa13.37□□□□□ -0.27
TRIM28-212ENST00000597995 CNNM4Q6P4Q7 775 aa13.37□□□□□ -0.27
TRIM28-212ENST00000597995 DENND5BQ6ZUT9 1274 aa13.37□□□□□ -0.27
TRIM28-212ENST00000597995 TTC16Q8NEE8 873 aa13.37□□□□□ -0.27
TRIM28-212ENST00000597995 KBTBD7Q8WVZ9 684 aa13.37□□□□□ -0.27
TRIM28-212ENST00000597995 HPDLQ96IR7 371 aa13.37□□□□□ -0.27
TRIM28-212ENST00000597995 EDEM2Q9BV94 578 aa13.37□□□□□ -0.27
TRIM28-212ENST00000597995 TTLL2Q9BWV7 592 aa13.37□□□□□ -0.27
TRIM28-212ENST00000597995 PCIF1Q9H4Z3 704 aa13.37□□□□□ -0.27
TRIM28-212ENST00000597995 TRPM5Q9NZQ8 1165 aa13.37□□□□□ -0.27
TRIM28-212ENST00000597995 ABCA7Q8IZY2 2146 aa13.37□□□□□ -0.27
TRIM28-212ENST00000597995 CFAP47Q6ZTR5 3102 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 MYO16Q9Y6X6 1858 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 ZNF233A6NK53 670 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 K7EQS6 105 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 POLR2DO15514 142 aaKnown RBP13.36□□□□□ -0.27
TRIM28-212ENST00000597995 ATP2C2O75185 946 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 TNNC2P02585 160 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 BDNFP23560 247 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 LMO2P25791 158 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 GBP1P32455 592 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 GRIK1P39086 918 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 SLC7A9P82251 487 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 MRPS21P82921 87 aaKnown RBP13.36□□□□□ -0.27
TRIM28-212ENST00000597995 EHHADHQ08426 723 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 DUOXA2Q1HG44 320 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 GAB4Q2WGN9 574 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 RESP18Q5W5W9 173 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 ATL3Q6DD88 541 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 TCEAL6Q6IPX3 200 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 STXBP4Q6ZWJ1 553 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 CCDC65Q8IXS2 484 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 ADGRG2Q8IZP9 1017 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 TCEAL3Q969E4 200 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 MYLPFQ96A32 169 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 FAM84AQ96KN4 292 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 CNOT6LQ96LI5 555 aaKnown RBP13.36□□□□□ -0.27
TRIM28-212ENST00000597995 C7orf25Q9BPX7 421 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 CUEDC2Q9H467 287 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 KIAA1586Q9HCI6 787 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 CRTAC1Q9NQ79 661 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 MMP17Q9ULZ9 603 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 KIAA1549LQ6ZVL6 1849 aa13.36□□□□□ -0.27
TRIM28-212ENST00000597995 LNP1A1A4G5 178 aa13.35□□□□□ -0.27
TRIM28-212ENST00000597995 ZNF840PA6NDX5 716 aa13.35□□□□□ -0.27
TRIM28-212ENST00000597995 C4orf47A7E2U8 309 aa13.35□□□□□ -0.27
TRIM28-212ENST00000597995 LEFTY2O00292 366 aa13.35□□□□□ -0.27
TRIM28-212ENST00000597995 SLC9A3R1O14745 358 aaPredicted RBP13.35□□□□□ -0.27
TRIM28-212ENST00000597995 TRIM66O15016 1216 aa13.35□□□□□ -0.27
TRIM28-212ENST00000597995 KHNYNO15037 678 aaKnown RBP13.35□□□□□ -0.27
TRIM28-212ENST00000597995 OLFM2O95897 454 aa13.35□□□□□ -0.27
TRIM28-212ENST00000597995 ANXA13P27216 316 aa13.35□□□□□ -0.27
TRIM28-212ENST00000597995 EIF2DP41214 584 aaKnown RBP13.35□□□□□ -0.27
TRIM28-212ENST00000597995 ME1P48163 572 aa13.35□□□□□ -0.27
TRIM28-212ENST00000597995 PSMC1P62191 440 aaKnown RBP13.35□□□□□ -0.27
TRIM28-212ENST00000597995 NOP14P78316 857 aaKnown RBP13.35□□□□□ -0.27
TRIM28-212ENST00000597995 ZXDBP98169 803 aa13.35□□□□□ -0.27
TRIM28-212ENST00000597995 CRY1Q16526 586 aa13.35□□□□□ -0.27
TRIM28-212ENST00000597995 HSF5Q4G112 596 aaPredicted RBP13.35□□□□□ -0.27
TRIM28-212ENST00000597995 C2orf27AQ580R0 203 aa13.35□□□□□ -0.27
TRIM28-212ENST00000597995 PSAPL1Q6NUJ1 521 aa13.35□□□□□ -0.27
TRIM28-212ENST00000597995 EPM2AIP1Q7L775 607 aaPredicted RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms