RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 ANTXRLA6NF34 631 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.87□□□□□ -0.67
TRIM28-210ENST00000597618 LEFTY2O00292 366 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 ARHGAP33O14559 1287 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 SLC9A3R1O14745 358 aaPredicted RBP10.87□□□□□ -0.67
TRIM28-210ENST00000597618 KAT7O95251 611 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 SYPP08247 313 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 CHRM1P11229 460 aaPredicted RBP10.87□□□□□ -0.67
TRIM28-210ENST00000597618 CD59P13987 128 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 TIE1P35590 1138 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 RPL6Q02878 288 aaKnown RBP10.87□□□□□ -0.67
TRIM28-210ENST00000597618 RESTQ13127 1097 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 TRIP6Q15654 476 aaKnown RBP10.87□□□□□ -0.67
TRIM28-210ENST00000597618 ADALQ6DHV7 355 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 SLC39A4Q6P5W5 647 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 FILIP1Q7Z7B0 1213 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 NT5DC4Q86YG4 428 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 SPATA2LQ8IUW3 424 aaPredicted RBP10.87□□□□□ -0.67
TRIM28-210ENST00000597618 TMEM86AQ8N2M4 240 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 PGBD3Q8N328 593 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 MYCT1Q8N699 235 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 FRMD1Q8N878 549 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 ADAMTS14Q8WXS8 1223 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 FUBP3Q96I24 572 aaKnown RBP eCLIP10.87□□□□□ -0.67
TRIM28-210ENST00000597618 PNMA5Q96PV4 448 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 PKMYT1Q99640 499 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 REEP2Q9BRK0 252 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 LLPHQ9BRT6 129 aaKnown RBP10.87□□□□□ -0.67
TRIM28-210ENST00000597618 PARVGQ9HBI0 331 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 DNAAF2Q9NVR5 837 aaKnown RBP10.87□□□□□ -0.67
TRIM28-210ENST00000597618 L1RE1Q9UN81 338 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 PCDHB9Q9Y5E1 797 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 ADAMTS20P59510 1910 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 SCN1AP35498 2009 aa10.87□□□□□ -0.67
TRIM28-210ENST00000597618 TNRC6BQ9UPQ9 1833 aaKnown RBP10.86□□□□□ -0.67
TRIM28-210ENST00000597618 HUS1O60921 280 aa10.86□□□□□ -0.67
TRIM28-210ENST00000597618 ADAM23O75077 832 aa10.86□□□□□ -0.67
TRIM28-210ENST00000597618 FAM13AO94988 1023 aa10.86□□□□□ -0.67
TRIM28-210ENST00000597618 IL18RAPO95256 599 aa10.86□□□□□ -0.67
TRIM28-210ENST00000597618 ADH1CP00326 375 aa10.86□□□□□ -0.67
TRIM28-210ENST00000597618 FTH1P19P0C7X4 201 aa10.86□□□□□ -0.67
TRIM28-210ENST00000597618 ACAT1P24752 427 aaKnown RBP10.86□□□□□ -0.67
TRIM28-210ENST00000597618 PCSK1P29120 753 aa10.86□□□□□ -0.67
TRIM28-210ENST00000597618 GRIA2P42262 883 aa10.86□□□□□ -0.67
TRIM28-210ENST00000597618 PI4KAP42356 2102 aa10.86□□□□□ -0.67
TRIM28-210ENST00000597618 MAGEA11P43364 429 aa10.86□□□□□ -0.67
TRIM28-210ENST00000597618 TNFRSF4P43489 277 aa10.86□□□□□ -0.67
TRIM28-210ENST00000597618 KIR2DL1P43626 348 aaPredicted RBP10.86□□□□□ -0.67
TRIM28-210ENST00000597618 TOB1P50616 345 aaPredicted RBP10.86□□□□□ -0.67
TRIM28-210ENST00000597618 NEK4P51957 841 aa10.86□□□□□ -0.67
TRIM28-210ENST00000597618 ZNF131P52739 623 aa10.86□□□□□ -0.67
TRIM28-210ENST00000597618 ZNF33AQ06730 810 aa10.86□□□□□ -0.67
TRIM28-210ENST00000597618 DHCR24Q15392 516 aa10.86□□□□□ -0.67
TRIM28-210ENST00000597618 ARSHQ5FYA8 562 aa10.86□□□□□ -0.67
TRIM28-210ENST00000597618 SLFN12LQ6IEE8 588 aa10.86□□□□□ -0.67
TRIM28-210ENST00000597618 CCNI2Q6ZMN8 369 aaPredicted RBP10.86□□□□□ -0.67
TRIM28-210ENST00000597618 TRMT11Q7Z4G4 463 aaKnown RBP10.86□□□□□ -0.67
TRIM28-210ENST00000597618 SFTPA1Q8IWL2 248 aa10.86□□□□□ -0.67
TRIM28-210ENST00000597618 SCN4BQ8IWT1 228 aa10.86□□□□□ -0.67
TRIM28-210ENST00000597618 LRRC15Q8TF66 581 aa10.86□□□□□ -0.67
TRIM28-210ENST00000597618 CEP295NLQ96MC4 621 aa10.86□□□□□ -0.67
TRIM28-210ENST00000597618 PLIN2Q99541 437 aa10.86□□□□□ -0.67
TRIM28-210ENST00000597618 SCUBE2Q9NQ36 999 aa10.86□□□□□ -0.67
TRIM28-210ENST00000597618 ARHGEF4Q9NR80 690 aa10.86□□□□□ -0.67
TRIM28-210ENST00000597618 AGO2Q9UKV8 859 aaKnown RBP10.86□□□□□ -0.67
TRIM28-210ENST00000597618 A0A0A0MRY4 1105 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 A0A1W2PQD8 194 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 SH3BP5O60239 455 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 TRAK2O60296 914 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 POLR2BP30876 1174 aaKnown RBP10.85□□□□□ -0.67
TRIM28-210ENST00000597618 SLC6A11P48066 632 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 LHX1P48742 406 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 SLC7A9P82251 487 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 HMGN5P82970 282 aaKnown RBP10.85□□□□□ -0.67
TRIM28-210ENST00000597618 ZXDBP98169 803 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 ATP2C1P98194 919 aaPredicted RBP10.85□□□□□ -0.67
TRIM28-210ENST00000597618 GTF2BQ00403 316 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 KDSRQ06136 332 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 MESP2Q0VG99 397 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 TMEM119Q4V9L6 283 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 C4orf50Q6ZRC1 276 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 GPBP1Q86WP2 473 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 NAXDQ8IW45 347 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 CCDC83Q8IWF9 413 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 ADGRG2Q8IZP9 1017 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 LRRC52Q8N7C0 313 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 FAM184AQ8NB25 1140 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 OR2I1PQ8NGU4 316 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 KCNV2Q8TDN2 545 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 SPATA17Q96L03 361 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.85□□□□□ -0.67
TRIM28-210ENST00000597618 EHD2Q9NZN4 543 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 TRPM5Q9NZQ8 1165 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 CALCOCO1Q9P1Z2 691 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 GTF3C4Q9UKN8 822 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 APOBEC2Q9Y235 224 aaKnown RBP10.85□□□□□ -0.67
TRIM28-210ENST00000597618 STYXL1Q9Y6J8 313 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 PTPRDP23468 1912 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 ANK1P16157 1881 aa10.85□□□□□ -0.67
TRIM28-210ENST00000597618 MYH11P35749 1972 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms