RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ARHGEF26Q96DR7 871 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 B3GALT6Q96L58 329 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 CPXM1Q96SM3 734 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 PNPLA8Q9NP80 782 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 PCDH10Q9P2E7 1040 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 DNAI1Q9UI46 699 aa16.07■□□□□ 0.16
TRIM28-209ENST00000597423 CTAGE9A4FU28 777 aa16.06■□□□□ 0.16
TRIM28-209ENST00000597423 SIGLEC16A6NMB1 481 aa16.06■□□□□ 0.16
TRIM28-209ENST00000597423 C2CD2LO14523 706 aa16.06■□□□□ 0.16
TRIM28-209ENST00000597423 ABL1P00519 1130 aa16.06■□□□□ 0.16
TRIM28-209ENST00000597423 CTSAP10619 480 aa16.06■□□□□ 0.16
TRIM28-209ENST00000597423 SCNN1AP37088 669 aa16.06■□□□□ 0.16
TRIM28-209ENST00000597423 TUFMP49411 452 aaKnown RBP16.06■□□□□ 0.16
TRIM28-209ENST00000597423 RGS7P49802 495 aa16.06■□□□□ 0.16
TRIM28-209ENST00000597423 RPL10AP62906 217 aaKnown RBP16.06■□□□□ 0.16
TRIM28-209ENST00000597423 RAB30Q15771 203 aa16.06■□□□□ 0.16
TRIM28-209ENST00000597423 EFHC1Q5JVL4 640 aa16.06■□□□□ 0.16
TRIM28-209ENST00000597423 PRSS55Q6UWB4 352 aaPredicted RBP16.06■□□□□ 0.16
TRIM28-209ENST00000597423 SYT10Q6XYQ8 523 aa16.06■□□□□ 0.16
TRIM28-209ENST00000597423 CLEC20AQ6ZU45 233 aa16.06■□□□□ 0.16
TRIM28-209ENST00000597423 DAAM2Q86T65 1068 aa16.06■□□□□ 0.16
TRIM28-209ENST00000597423 TPCN2Q8NHX9 752 aa16.06■□□□□ 0.16
TRIM28-209ENST00000597423 CEP295NLQ96MC4 621 aa16.06■□□□□ 0.16
TRIM28-209ENST00000597423 TMEM209Q96SK2 561 aa16.06■□□□□ 0.16
TRIM28-209ENST00000597423 C11orf84Q9BUA3 381 aaPredicted RBP16.06■□□□□ 0.16
TRIM28-209ENST00000597423 TMLHEQ9NVH6 421 aa16.06■□□□□ 0.16
TRIM28-209ENST00000597423 ABI2Q9NYB9 513 aaPredicted RBP16.06■□□□□ 0.16
TRIM28-209ENST00000597423 FNIP2Q9P278 1114 aa16.06■□□□□ 0.16
TRIM28-209ENST00000597423 HSFX1Q9UBD0 423 aa16.06■□□□□ 0.16
TRIM28-209ENST00000597423 CYTH4Q9UIA0 394 aa16.06■□□□□ 0.16
TRIM28-209ENST00000597423 MSRAQ9UJ68 235 aa16.06■□□□□ 0.16
TRIM28-209ENST00000597423 JRKLQ9Y4A0 524 aa16.06■□□□□ 0.16
TRIM28-209ENST00000597423 PCDHGC5Q9Y5F6 944 aa16.06■□□□□ 0.16
TRIM28-209ENST00000597423 CDY1Q9Y6F8 540 aa16.06■□□□□ 0.16
TRIM28-209ENST00000597423 LINC01553A4QN01 128 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 E5RJQ4 531 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 PALMO75781 387 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 CXCL14O95715 111 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 ERBB2P04626 1255 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 OR4Q2P0C623 313 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 LCP1P13796 627 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 BMP8BP34820 402 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 OR1D2P34982 312 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 SLC1A1P43005 524 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 RABGGTBP53611 331 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 SLC6A3Q01959 620 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 CYP4A22Q5TCH4 519 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 TMC7Q7Z402 723 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 XYLT1Q86Y38 959 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 SLC35F6Q8N357 371 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 ZNF461Q8TAF7 563 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 ZNF592Q92610 1267 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 MCRS1Q96EZ8 462 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 C8orf48Q96LL4 319 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 TGS1Q96RS0 853 aaKnown RBP16.05■□□□□ 0.16
TRIM28-209ENST00000597423 SMOQ99835 787 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 GDF15Q99988 308 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 TRIM62Q9BVG3 475 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 VN1R3Q9BXE9 311 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 EMILIN2Q9BXX0 1053 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 IRX2Q9BZI1 471 aaPredicted RBP16.05■□□□□ 0.16
TRIM28-209ENST00000597423 EHD2Q9NZN4 543 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 IP6K2Q9UHH9 426 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 SALL4Q9UJQ4 1053 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 ANAPC7Q9UJX3 599 aa16.05■□□□□ 0.16
TRIM28-209ENST00000597423 FAM170AA1A519 330 aa16.04■□□□□ 0.16
TRIM28-209ENST00000597423 TMEM191CA6NGB0 347 aa16.04■□□□□ 0.16
TRIM28-209ENST00000597423 C5orf67F2Z3F1 127 aa16.04■□□□□ 0.16
TRIM28-209ENST00000597423 H0YGN5 161 aa16.04■□□□□ 0.16
TRIM28-209ENST00000597423 GOLGA8SH3BPF8 625 aa16.04■□□□□ 0.16
TRIM28-209ENST00000597423 GLI1P08151 1106 aa16.04■□□□□ 0.16
TRIM28-209ENST00000597423 CYP2F1P24903 491 aa16.04■□□□□ 0.16
TRIM28-209ENST00000597423 ELF1P32519 619 aa16.04■□□□□ 0.16
TRIM28-209ENST00000597423 TKTL1P51854 596 aa16.04■□□□□ 0.16
TRIM28-209ENST00000597423 TUBB2AQ13885 445 aa16.04■□□□□ 0.16
TRIM28-209ENST00000597423 RAB33AQ14088 237 aa16.04■□□□□ 0.16
TRIM28-209ENST00000597423 PIGHQ14442 188 aaPredicted RBP16.04■□□□□ 0.16
TRIM28-209ENST00000597423 MESDQ14696 234 aa16.04■□□□□ 0.16
TRIM28-209ENST00000597423 C2CD6Q53TS8 623 aa16.04■□□□□ 0.16
TRIM28-209ENST00000597423 PDE12Q6L8Q7 609 aaKnown RBP16.04■□□□□ 0.16
TRIM28-209ENST00000597423 C11orf63Q6NUN7 778 aa16.04■□□□□ 0.16
TRIM28-209ENST00000597423 PHLDB2Q86SQ0 1253 aa16.04■□□□□ 0.16
TRIM28-209ENST00000597423 SCN4BQ8IWT1 228 aa16.04■□□□□ 0.16
TRIM28-209ENST00000597423 SCUBE3Q8IX30 993 aa16.04■□□□□ 0.16
TRIM28-209ENST00000597423 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.04■□□□□ 0.16
TRIM28-209ENST00000597423 GOLGA1Q92805 767 aa16.04■□□□□ 0.16
TRIM28-209ENST00000597423 NAPGQ99747 312 aaPredicted RBP16.04■□□□□ 0.16
TRIM28-209ENST00000597423 NCAPGQ9BPX3 1015 aa16.04■□□□□ 0.16
TRIM28-209ENST00000597423 TUBB2BQ9BVA1 445 aa16.04■□□□□ 0.16
TRIM28-209ENST00000597423 RXFP1Q9HBX9 757 aa16.04■□□□□ 0.16
TRIM28-209ENST00000597423 NGRNQ9NPE2 291 aaKnown RBP16.04■□□□□ 0.16
TRIM28-209ENST00000597423 OSGEPQ9NPF4 335 aa16.04■□□□□ 0.16
TRIM28-209ENST00000597423 CNGB3Q9NQW8 809 aa16.04■□□□□ 0.16
TRIM28-209ENST00000597423 COMMD8Q9NX08 183 aa16.04■□□□□ 0.16
TRIM28-209ENST00000597423 AFF4Q9UHB7 1163 aaKnown RBP16.04■□□□□ 0.16
TRIM28-209ENST00000597423 AMFRQ9UKV5 643 aa16.04■□□□□ 0.16
TRIM28-209ENST00000597423 LCHNA4D1U4 455 aa16.03■□□□□ 0.16
TRIM28-209ENST00000597423 GRID2IPA4D2P6 1211 aa16.03■□□□□ 0.16
TRIM28-209ENST00000597423 TULP2O00295 520 aa16.03■□□□□ 0.16
TRIM28-209ENST00000597423 ATMINO43313 823 aaPredicted RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms