RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 FKBP1AP62942 108 aaKnown RBP15.96■□□□□ 0.14
UPF1-204ENST00000596842 SH3PXD2AQ5TCZ1 1133 aa15.96■□□□□ 0.14
UPF1-204ENST00000596842 ZCCHC23Q6ZST2 131 aa15.96■□□□□ 0.14
UPF1-204ENST00000596842 UCMAQ8WVF2 138 aa15.96■□□□□ 0.14
UPF1-204ENST00000596842 EURLQ9NYK6 297 aa15.96■□□□□ 0.14
UPF1-204ENST00000596842 SPDYE5A6NIY4 337 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 DKC1O60832 514 aaKnown RBP eCLIP15.95■□□□□ 0.14
UPF1-204ENST00000596842 KCNA2P16389 499 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 TUBP50607 506 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 PTP4A2Q12974 167 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 RAB6CQ53S08 254 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 WDR78Q5VTH9 848 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 ARID3BQ8IVW6 561 aaPredicted RBP15.95■□□□□ 0.14
UPF1-204ENST00000596842 RNF149Q8NC42 400 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 SNRNP27Q8WVK2 155 aaKnown RBP15.95■□□□□ 0.14
UPF1-204ENST00000596842 TEKT4Q8WW24 435 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 CLPTM1LQ96KA5 538 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 ACAP3Q96P50 834 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 RAB6CQ9H0N0 254 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.95■□□□□ 0.14
UPF1-204ENST00000596842 TRIM49D1C9J1S8 452 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 COPEO14579 308 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 NVLO15381 856 aaKnown RBP15.95■□□□□ 0.14
UPF1-204ENST00000596842 RNF8O76064 485 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 ZWINTO95229 277 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 APRTP07741 180 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 ALDH18A1P54886 795 aaKnown RBP15.95■□□□□ 0.14
UPF1-204ENST00000596842 PTPN20Q4JDL3 420 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 PPP6R3Q5H9R7 873 aaPredicted RBP15.95■□□□□ 0.14
UPF1-204ENST00000596842 SERAC1Q96JX3 654 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 CGRRF1Q99675 332 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 PDGFDQ9GZP0 370 aaPredicted RBP15.95■□□□□ 0.14
UPF1-204ENST00000596842 SHOC2Q9UQ13 582 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 KLHL33A6NCF5 533 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 CYB561D2O14569 222 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 TPD52L2O43399 206 aaKnown RBP15.95■□□□□ 0.14
UPF1-204ENST00000596842 SMNDC1O75940 238 aaKnown RBP eCLIP15.95■□□□□ 0.14
UPF1-204ENST00000596842 RFC5P40937 340 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 SKIV2L2P42285 1042 aaKnown RBP15.95■□□□□ 0.14
UPF1-204ENST00000596842 OASLQ15646 514 aaKnown RBP15.95■□□□□ 0.14
UPF1-204ENST00000596842 PDCD2Q16342 344 aaPredicted RBP15.95■□□□□ 0.14
UPF1-204ENST00000596842 FAM102AQ5T9C2 384 aaPredicted RBP15.95■□□□□ 0.14
UPF1-204ENST00000596842 SNX30Q5VWJ9 437 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 C15orf39Q6ZRI6 1047 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 DDX50Q9BQ39 737 aaKnown RBP15.95■□□□□ 0.14
UPF1-204ENST00000596842 C17orf75Q9HAS0 396 aa15.95■□□□□ 0.14
UPF1-204ENST00000596842 NGRNQ9NPE2 291 aaKnown RBP15.95■□□□□ 0.14
UPF1-204ENST00000596842 B2RBV5 119 aa15.94■□□□□ 0.14
UPF1-204ENST00000596842 CCDC22O60826 627 aa15.94■□□□□ 0.14
UPF1-204ENST00000596842 LRCH4O75427 683 aa15.94■□□□□ 0.14
UPF1-204ENST00000596842 IGBP1P78318 339 aa15.94■□□□□ 0.14
UPF1-204ENST00000596842 PIGHQ14442 188 aaPredicted RBP15.94■□□□□ 0.14
UPF1-204ENST00000596842 NBPF12Q5TAG4 269 aaPredicted RBP15.94■□□□□ 0.14
UPF1-204ENST00000596842 SLFN12LQ6IEE8 588 aa15.94■□□□□ 0.14
UPF1-204ENST00000596842 CASC4Q6P4E1 433 aa15.94■□□□□ 0.14
UPF1-204ENST00000596842 NETO2Q8NC67 525 aa15.94■□□□□ 0.14
UPF1-204ENST00000596842 PRPF31Q8WWY3 499 aaKnown RBP15.94■□□□□ 0.14
UPF1-204ENST00000596842 TOP3BO95985 862 aaKnown RBP15.94■□□□□ 0.14
UPF1-204ENST00000596842 UBTFL6P0CB48 400 aaPredicted RBP15.94■□□□□ 0.14
UPF1-204ENST00000596842 RGS7P49802 495 aa15.94■□□□□ 0.14
UPF1-204ENST00000596842 KLHL38Q2WGJ6 581 aa15.94■□□□□ 0.14
UPF1-204ENST00000596842 ANO7Q6IWH7 933 aa15.94■□□□□ 0.14
UPF1-204ENST00000596842 STYK1Q6J9G0 422 aa15.94■□□□□ 0.14
UPF1-204ENST00000596842 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.94■□□□□ 0.14
UPF1-204ENST00000596842 SLC24A2Q9UI40 661 aa15.94■□□□□ 0.14
UPF1-204ENST00000596842 ZNRF3Q9ULT6 936 aa15.94■□□□□ 0.14
UPF1-204ENST00000596842 MAGED2Q9UNF1 606 aaPredicted RBP15.94■□□□□ 0.14
UPF1-204ENST00000596842 PGM1P36871 562 aa15.94■□□□□ 0.14
UPF1-204ENST00000596842 MROH9Q5TGP6 573 aa15.94■□□□□ 0.14
UPF1-204ENST00000596842 RINLQ6ZS11 566 aa15.94■□□□□ 0.14
UPF1-204ENST00000596842 KIAA0319LQ8IZA0 1049 aa15.94■□□□□ 0.14
UPF1-204ENST00000596842 WDR60Q8WVS4 1066 aa15.94■□□□□ 0.14
UPF1-204ENST00000596842 TRAPPC12Q8WVT3 735 aa15.94■□□□□ 0.14
UPF1-204ENST00000596842 LPAR1Q92633 364 aa15.94■□□□□ 0.14
UPF1-204ENST00000596842 GBP5Q96PP8 586 aa15.94■□□□□ 0.14
UPF1-204ENST00000596842 NMRK1Q9NWW6 199 aa15.94■□□□□ 0.14
UPF1-204ENST00000596842 ZNFX1Q9P2E3 1918 aaKnown RBP15.93■□□□□ 0.14
UPF1-204ENST00000596842 SLX4Q8IY92 1834 aa15.93■□□□□ 0.14
UPF1-204ENST00000596842 I3L4J1 428 aa15.93■□□□□ 0.14
UPF1-204ENST00000596842 KCNN4O15554 427 aa15.93■□□□□ 0.14
UPF1-204ENST00000596842 ZNF200P98182 395 aaPredicted RBP15.93■□□□□ 0.14
UPF1-204ENST00000596842 CCDC15Q0P6D6 951 aa15.93■□□□□ 0.14
UPF1-204ENST00000596842 BLMHQ13867 455 aa15.93■□□□□ 0.14
UPF1-204ENST00000596842 C15orf59Q2T9L4 293 aaPredicted RBP15.93■□□□□ 0.14
UPF1-204ENST00000596842 NSL1Q96IY1 281 aa15.93■□□□□ 0.14
UPF1-204ENST00000596842 VCPIP1Q96JH7 1222 aa15.93■□□□□ 0.14
UPF1-204ENST00000596842 WRNIP1Q96S55 665 aa15.93■□□□□ 0.14
UPF1-204ENST00000596842 NMUR2Q9GZQ4 415 aa15.93■□□□□ 0.14
UPF1-204ENST00000596842 SMYD3Q9H7B4 428 aa15.93■□□□□ 0.14
UPF1-204ENST00000596842 PCMTD2Q9NV79 361 aa15.93■□□□□ 0.14
UPF1-204ENST00000596842 STOML1Q9UBI4 398 aa15.93■□□□□ 0.14
UPF1-204ENST00000596842 NR2E3Q9Y5X4 410 aa15.93■□□□□ 0.14
UPF1-204ENST00000596842 TCRBV9S1A1TA0A576 114 aa15.93■□□□□ 0.14
UPF1-204ENST00000596842 LDHAP00338 332 aaKnown RBP15.93■□□□□ 0.14
UPF1-204ENST00000596842 DEUP1Q05D60 604 aa15.93■□□□□ 0.14
UPF1-204ENST00000596842 KRT81Q14533 505 aa15.93■□□□□ 0.14
UPF1-204ENST00000596842 DUOXA2Q1HG44 320 aa15.93■□□□□ 0.14
UPF1-204ENST00000596842 PARP6Q2NL67 630 aa15.93■□□□□ 0.14
UPF1-204ENST00000596842 SLC45A4Q5BKX6 768 aa15.93■□□□□ 0.14
UPF1-204ENST00000596842 ACSBG2Q5FVE4 666 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms