RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 PIK3CAP42336 1068 aa13.9□□□□□ -0.18
LIG1-212ENST00000596549 VAMP7P51809 220 aa13.9□□□□□ -0.18
LIG1-212ENST00000596549 NOP14P78316 857 aaKnown RBP13.9□□□□□ -0.18
LIG1-212ENST00000596549 NUCB2P80303 420 aa13.9□□□□□ -0.18
LIG1-212ENST00000596549 ZXDBP98169 803 aa13.9□□□□□ -0.18
LIG1-212ENST00000596549 CSTF1Q05048 431 aaKnown RBP13.9□□□□□ -0.18
LIG1-212ENST00000596549 FAM160A1Q05DH4 1040 aa13.9□□□□□ -0.18
LIG1-212ENST00000596549 PPP3CAQ08209 521 aa13.9□□□□□ -0.18
LIG1-212ENST00000596549 ORC1Q13415 861 aa13.9□□□□□ -0.18
LIG1-212ENST00000596549 MTF1Q14872 753 aa13.9□□□□□ -0.18
LIG1-212ENST00000596549 PON2Q15165 354 aa13.9□□□□□ -0.18
LIG1-212ENST00000596549 PAQR9Q6ZVX9 377 aa13.9□□□□□ -0.18
LIG1-212ENST00000596549 RALGPS2Q86X27 583 aaPredicted RBP13.9□□□□□ -0.18
LIG1-212ENST00000596549 ARL14EPQ8N8R7 260 aaPredicted RBP13.9□□□□□ -0.18
LIG1-212ENST00000596549 ERCC4Q92889 916 aaPredicted RBP13.9□□□□□ -0.18
LIG1-212ENST00000596549 C8orf48Q96LL4 319 aa13.9□□□□□ -0.18
LIG1-212ENST00000596549 CEP295NLQ96MC4 621 aa13.9□□□□□ -0.18
LIG1-212ENST00000596549 CYP2S1Q96SQ9 504 aa13.9□□□□□ -0.18
LIG1-212ENST00000596549 EBF3Q9H4W6 596 aa13.9□□□□□ -0.18
LIG1-212ENST00000596549 LMAN1LQ9HAT1 526 aa13.9□□□□□ -0.18
LIG1-212ENST00000596549 APOBEC3GQ9HC16 384 aaKnown RBP13.9□□□□□ -0.18
LIG1-212ENST00000596549 GKN1Q9NS71 199 aa13.9□□□□□ -0.18
LIG1-212ENST00000596549 FRMD4BQ9Y2L6 1034 aa13.9□□□□□ -0.18
LIG1-212ENST00000596549 TRAV19A0A0A6YYK7 116 aa13.89□□□□□ -0.19
LIG1-212ENST00000596549 KIF20AO95235 890 aa13.89□□□□□ -0.19
LIG1-212ENST00000596549 OLFM2O95897 454 aa13.89□□□□□ -0.19
LIG1-212ENST00000596549 ANXA13P27216 316 aa13.89□□□□□ -0.19
LIG1-212ENST00000596549 CCINQ13939 588 aa13.89□□□□□ -0.19
LIG1-212ENST00000596549 ITPRIPL2Q3MIP1 535 aa13.89□□□□□ -0.19
LIG1-212ENST00000596549 NAIF1Q69YI7 327 aaPredicted RBP13.89□□□□□ -0.19
LIG1-212ENST00000596549 C1orf228Q6PIY5 440 aa13.89□□□□□ -0.19
LIG1-212ENST00000596549 ZC3H14Q6PJT7 736 aaKnown RBP13.89□□□□□ -0.19
LIG1-212ENST00000596549 INTS8Q75QN2 995 aaKnown RBP13.89□□□□□ -0.19
LIG1-212ENST00000596549 FAM186BQ8IYM0 893 aa13.89□□□□□ -0.19
LIG1-212ENST00000596549 ZBTB44Q8NCP5 570 aa13.89□□□□□ -0.19
LIG1-212ENST00000596549 TAS1R2Q8TE23 839 aa13.89□□□□□ -0.19
LIG1-212ENST00000596549 EEF2KMTQ96G04 330 aa13.89□□□□□ -0.19
LIG1-212ENST00000596549 TWNKQ96RR1 684 aa13.89□□□□□ -0.19
LIG1-212ENST00000596549 IER2Q9BTL4 223 aa13.89□□□□□ -0.19
LIG1-212ENST00000596549 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.89□□□□□ -0.191e-14■■■■■ 49.4
LIG1-212ENST00000596549 C2orf42Q9NWW7 574 aa13.89□□□□□ -0.19
LIG1-212ENST00000596549 ATG2BQ96BY7 2078 aa13.88□□□□□ -0.19
LIG1-212ENST00000596549 IKBKBO14920 756 aa13.88□□□□□ -0.19
LIG1-212ENST00000596549 LILRB5O75023 590 aa13.88□□□□□ -0.19
LIG1-212ENST00000596549 LMNAP02545 664 aaKnown RBP13.88□□□□□ -0.19
LIG1-212ENST00000596549 USP17L7P0C7H9 530 aa13.88□□□□□ -0.19
LIG1-212ENST00000596549 CCDC130P13994 396 aa13.88□□□□□ -0.19
LIG1-212ENST00000596549 TCF3P15923 654 aa13.88□□□□□ -0.19
LIG1-212ENST00000596549 GCLMP48507 274 aa13.88□□□□□ -0.19
LIG1-212ENST00000596549 NDST1P52848 882 aa13.88□□□□□ -0.19
LIG1-212ENST00000596549 MCCD1P59942 119 aaPredicted RBP13.88□□□□□ -0.19
LIG1-212ENST00000596549 SATB1Q01826 763 aa13.88□□□□□ -0.19
LIG1-212ENST00000596549 IFRD2Q12894 506 aaPredicted RBP13.88□□□□□ -0.19
LIG1-212ENST00000596549 RUNX3Q13761 415 aa13.88□□□□□ -0.19
LIG1-212ENST00000596549 EDRF1Q3B7T1 1238 aa13.88□□□□□ -0.19
LIG1-212ENST00000596549 ACOT1Q86TX2 421 aa13.88□□□□□ -0.19
LIG1-212ENST00000596549 FUKQ8N0W3 1084 aa13.88□□□□□ -0.19
LIG1-212ENST00000596549 ADSSL1Q8N142 457 aa13.88□□□□□ -0.19
LIG1-212ENST00000596549 SUMF1Q8NBK3 374 aa13.88□□□□□ -0.19
LIG1-212ENST00000596549 ZMIZ2Q8NF64 920 aa13.88□□□□□ -0.19
LIG1-212ENST00000596549 SPATA20Q8TB22 786 aa13.88□□□□□ -0.19
LIG1-212ENST00000596549 KCNK16Q96T55 309 aa13.88□□□□□ -0.19
LIG1-212ENST00000596549 MMRN2Q9H8L6 949 aa13.88□□□□□ -0.19
LIG1-212ENST00000596549 KRT82Q9NSB4 513 aa13.88□□□□□ -0.19
LIG1-212ENST00000596549 THG1LQ9NWX6 298 aaKnown RBP13.88□□□□□ -0.19
LIG1-212ENST00000596549 ARHGAP26Q9UNA1 814 aa13.88□□□□□ -0.19
LIG1-212ENST00000596549 WNT6Q9Y6F9 365 aa13.88□□□□□ -0.19
LIG1-212ENST00000596549 ZFHX2Q9C0A1 2572 aaPredicted RBP13.88□□□□□ -0.19
LIG1-212ENST00000596549 ZNF840PA6NDX5 716 aa13.87□□□□□ -0.19
LIG1-212ENST00000596549 TNFRSF10BO14763 440 aa13.87□□□□□ -0.19
LIG1-212ENST00000596549 BEST1O76090 585 aa13.87□□□□□ -0.19
LIG1-212ENST00000596549 OAS1P00973 400 aaKnown RBP13.87□□□□□ -0.19
LIG1-212ENST00000596549 HOXC13P31276 330 aa13.87□□□□□ -0.19
LIG1-212ENST00000596549 PSMC2P35998 433 aaKnown RBP13.87□□□□□ -0.19
LIG1-212ENST00000596549 PRCPP42785 496 aa13.87□□□□□ -0.19
LIG1-212ENST00000596549 CCR3P51677 355 aa13.87□□□□□ -0.19
LIG1-212ENST00000596549 SLC5A3P53794 718 aa13.87□□□□□ -0.19
LIG1-212ENST00000596549 PMS1P54277 932 aaKnown RBP13.87□□□□□ -0.19
LIG1-212ENST00000596549 ENPEPQ07075 957 aa13.87□□□□□ -0.19
LIG1-212ENST00000596549 INCA1Q0VD86 236 aa13.87□□□□□ -0.19
LIG1-212ENST00000596549 TAF10Q12962 218 aa13.87□□□□□ -0.19
LIG1-212ENST00000596549 ADAM9Q13443 819 aa13.87□□□□□ -0.19
LIG1-212ENST00000596549 LRRC32Q14392 662 aa13.87□□□□□ -0.19
LIG1-212ENST00000596549 SGSM1Q2NKQ1 1148 aa13.87□□□□□ -0.19
LIG1-212ENST00000596549 COBLL1Q53SF7 1204 aa13.87□□□□□ -0.19
LIG1-212ENST00000596549 ZNF658Q5TYW1 1059 aaPredicted RBP13.87□□□□□ -0.19
LIG1-212ENST00000596549 FSTL4Q6MZW2 842 aa13.87□□□□□ -0.19
LIG1-212ENST00000596549 PKN3Q6P5Z2 889 aa13.87□□□□□ -0.19
LIG1-212ENST00000596549 MAMSTRQ6ZN01 415 aa13.87□□□□□ -0.19
LIG1-212ENST00000596549 ZC3H3Q8IXZ2 948 aaKnown RBP13.87□□□□□ -0.19
LIG1-212ENST00000596549 SH3RF2Q8TEC5 729 aa13.87□□□□□ -0.19
LIG1-212ENST00000596549 OSCP1Q8WVF1 389 aa13.87□□□□□ -0.19
LIG1-212ENST00000596549 TAF4BQ92750 862 aa13.87□□□□□ -0.19
LIG1-212ENST00000596549 SMARCD1Q96GM5 515 aa13.87□□□□□ -0.19
LIG1-212ENST00000596549 SEMA4AQ9H3S1 761 aa13.87□□□□□ -0.19
LIG1-212ENST00000596549 DMAP1Q9NPF5 467 aaPredicted RBP13.87□□□□□ -0.19
LIG1-212ENST00000596549 PCDHGA2Q9Y5H1 932 aa13.87□□□□□ -0.19
LIG1-212ENST00000596549 MYOFQ9NZM1 2061 aa13.87□□□□□ -0.19
LIG1-212ENST00000596549 TRIM49BA6NDI0 452 aa13.86□□□□□ -0.19
LIG1-212ENST00000596549 K7ESF4 209 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms