RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 CNPY3Q9BT09 278 aa20.66■□□□□ 0.9
CLIP3-206ENST00000593074 HES2Q9Y543 173 aa20.66■□□□□ 0.9
CLIP3-206ENST00000593074 TULP2O00295 520 aa20.66■□□□□ 0.9
CLIP3-206ENST00000593074 NDC80O14777 642 aa20.66■□□□□ 0.9
CLIP3-206ENST00000593074 CA12O43570 354 aa20.66■□□□□ 0.9
CLIP3-206ENST00000593074 CST8O60676 142 aa20.66■□□□□ 0.9
CLIP3-206ENST00000593074 KPNA6O60684 536 aa20.66■□□□□ 0.9
CLIP3-206ENST00000593074 DUSP11O75319 330 aaKnown RBP20.66■□□□□ 0.9
CLIP3-206ENST00000593074 RECQL4O94761 1208 aa20.66■□□□□ 0.9
CLIP3-206ENST00000593074 TRUB2O95900 331 aaKnown RBP20.66■□□□□ 0.9
CLIP3-206ENST00000593074 GPD1P21695 349 aa20.66■□□□□ 0.9
CLIP3-206ENST00000593074 CRYBB1P53674 252 aaPredicted RBP20.66■□□□□ 0.9
CLIP3-206ENST00000593074 MORF4L2Q15014 288 aa20.66■□□□□ 0.9
CLIP3-206ENST00000593074 ERMARDQ5T6L9 678 aa20.66■□□□□ 0.9
CLIP3-206ENST00000593074 PPP1R26Q5T8A7 1209 aaPredicted RBP20.66■□□□□ 0.9
CLIP3-206ENST00000593074 TRNP1Q6NT89 227 aa20.66■□□□□ 0.9
CLIP3-206ENST00000593074 B4GALNT4Q76KP1 1039 aa20.66■□□□□ 0.9
CLIP3-206ENST00000593074 TMEM40Q8WWA1 233 aa20.66■□□□□ 0.9
CLIP3-206ENST00000593074 C18orf25Q96B23 403 aaPredicted RBP20.66■□□□□ 0.9
CLIP3-206ENST00000593074 TMEM121Q9BTD3 319 aa20.66■□□□□ 0.9
CLIP3-206ENST00000593074 TPX2Q9ULW0 747 aaKnown RBP20.66■□□□□ 0.9
CLIP3-206ENST00000593074 PIN4Q9Y237 131 aaKnown RBP20.66■□□□□ 0.9
CLIP3-206ENST00000593074 NME7Q9Y5B8 376 aa20.66■□□□□ 0.9
CLIP3-206ENST00000593074 CD48P09326 243 aa20.65■□□□□ 0.9
CLIP3-206ENST00000593074 SETSIPP0DME0 302 aa20.65■□□□□ 0.9
CLIP3-206ENST00000593074 OTUD4Q01804 1114 aaKnown RBP20.65■□□□□ 0.9
CLIP3-206ENST00000593074 GPS1Q13098 491 aa20.65■□□□□ 0.9
CLIP3-206ENST00000593074 C9orf57Q5W0N0 161 aa20.65■□□□□ 0.9
CLIP3-206ENST00000593074 SPATS2Q86XZ4 545 aaKnown RBP20.65■□□□□ 0.9
CLIP3-206ENST00000593074 MDM1Q8TC05 714 aa20.65■□□□□ 0.9
CLIP3-206ENST00000593074 ACTL9Q8TC94 416 aa20.65■□□□□ 0.9
CLIP3-206ENST00000593074 PIWIL1Q96J94 861 aaKnown RBP20.65■□□□□ 0.9
CLIP3-206ENST00000593074 RBM15Q96T37 977 aaKnown RBP eCLIP20.65■□□□□ 0.9
CLIP3-206ENST00000593074 PCSK1NQ9UHG2 260 aa20.65■□□□□ 0.9
CLIP3-206ENST00000593074 ATXN2Q99700 1313 aaKnown RBP20.65■□□□□ 0.9
CLIP3-206ENST00000593074 ABHD2P08910 425 aa20.65■□□□□ 0.9
CLIP3-206ENST00000593074 C6orf222P0C671 652 aaPredicted RBP20.65■□□□□ 0.9
CLIP3-206ENST00000593074 ETS1P14921 441 aa20.65■□□□□ 0.9
CLIP3-206ENST00000593074 CHN1P15882 459 aa20.65■□□□□ 0.9
CLIP3-206ENST00000593074 PPARDQ03181 441 aa20.65■□□□□ 0.9
CLIP3-206ENST00000593074 GLRA4Q5JXX5 417 aa20.65■□□□□ 0.9
CLIP3-206ENST00000593074 CYP4V2Q6ZWL3 525 aaPredicted RBP20.65■□□□□ 0.9
CLIP3-206ENST00000593074 TAOK1Q7L7X3 1001 aa20.65■□□□□ 0.9
CLIP3-206ENST00000593074 UNC93AQ86WB7 457 aa20.65■□□□□ 0.9
CLIP3-206ENST00000593074 TTC30AQ86WT1 665 aa20.65■□□□□ 0.9
CLIP3-206ENST00000593074 KCTD6Q8NC69 237 aa20.65■□□□□ 0.9
CLIP3-206ENST00000593074 TRPV1Q8NER1 839 aa20.65■□□□□ 0.9
CLIP3-206ENST00000593074 XPO6Q96QU8 1125 aaKnown RBP20.65■□□□□ 0.9
CLIP3-206ENST00000593074 PEBP4Q96S96 227 aa20.65■□□□□ 0.9
CLIP3-206ENST00000593074 ABT1Q9ULW3 272 aaKnown RBP20.65■□□□□ 0.9
CLIP3-206ENST00000593074 UBQLN1Q9UMX0 589 aaKnown RBP20.65■□□□□ 0.9
CLIP3-206ENST00000593074 SHOC2Q9UQ13 582 aa20.65■□□□□ 0.9
CLIP3-206ENST00000593074 SGK1O00141 431 aa20.64■□□□□ 0.89
CLIP3-206ENST00000593074 MYO1CO00159 1063 aa20.64■□□□□ 0.89
CLIP3-206ENST00000593074 ENDOD1O94919 500 aa20.64■□□□□ 0.89
CLIP3-206ENST00000593074 HOXC8P31273 242 aa20.64■□□□□ 0.89
CLIP3-206ENST00000593074 FCGRTP55899 365 aa20.64■□□□□ 0.89
CLIP3-206ENST00000593074 DYNLT1P63172 113 aa20.64■□□□□ 0.89
CLIP3-206ENST00000593074 PLCB3Q01970 1234 aa20.64■□□□□ 0.89
CLIP3-206ENST00000593074 TAF5Q15542 800 aa20.64■□□□□ 0.89
CLIP3-206ENST00000593074 RNASEH2BQ5TBB1 312 aaKnown RBP20.64■□□□□ 0.89
CLIP3-206ENST00000593074 OR6B2Q6IFH4 312 aa20.64■□□□□ 0.89
CLIP3-206ENST00000593074 OLFML1Q6UWY5 402 aa20.64■□□□□ 0.89
CLIP3-206ENST00000593074 ACOT1Q86TX2 421 aa20.64■□□□□ 0.89
CLIP3-206ENST00000593074 ATXN2LQ8WWM7 1075 aaKnown RBP20.64■□□□□ 0.89
CLIP3-206ENST00000593074 RXFP2Q8WXD0 754 aa20.64■□□□□ 0.89
CLIP3-206ENST00000593074 SELENOSQ9BQE4 189 aa20.64■□□□□ 0.89
CLIP3-206ENST00000593074 APOL6Q9BWW8 343 aa20.64■□□□□ 0.89
CLIP3-206ENST00000593074 SLC4A5Q9BY07 1137 aa20.64■□□□□ 0.89
CLIP3-206ENST00000593074 FAM107BQ9H098 131 aa20.64■□□□□ 0.89
CLIP3-206ENST00000593074 APOC4-APOC2K7ER74 178 aa20.63■□□□□ 0.89
CLIP3-206ENST00000593074 DPYSL4O14531 572 aa20.63■□□□□ 0.89
CLIP3-206ENST00000593074 APOC2P02655 101 aa20.63■□□□□ 0.89
CLIP3-206ENST00000593074 PDGFRAP16234 1089 aa20.63■□□□□ 0.89
CLIP3-206ENST00000593074 MAGEA4P43358 317 aa20.63■□□□□ 0.89
CLIP3-206ENST00000593074 PSMC4P43686 418 aa20.63■□□□□ 0.89
CLIP3-206ENST00000593074 CORO7P57737 925 aa20.63■□□□□ 0.89
CLIP3-206ENST00000593074 CCDC142Q17RM4 750 aa20.63■□□□□ 0.89
CLIP3-206ENST00000593074 GNASQ5JWF2 1037 aa20.63■□□□□ 0.89
CLIP3-206ENST00000593074 MFSD14CQ5VZR4 134 aa20.63■□□□□ 0.89
CLIP3-206ENST00000593074 SAE1Q9UBE0 346 aaPredicted RBP20.63■□□□□ 0.89
CLIP3-206ENST00000593074 LGALS13Q9UHV8 139 aa20.63■□□□□ 0.89
CLIP3-206ENST00000593074 PECAM1P16284 738 aaPredicted RBP20.63■□□□□ 0.89
CLIP3-206ENST00000593074 AKAP5P24588 427 aa20.63■□□□□ 0.89
CLIP3-206ENST00000593074 ATP5DP30049 168 aa20.63■□□□□ 0.89
CLIP3-206ENST00000593074 SOWAHAQ2M3V2 549 aa20.63■□□□□ 0.89
CLIP3-206ENST00000593074 XKR4Q5GH76 650 aa20.63■□□□□ 0.89
CLIP3-206ENST00000593074 PMF1Q6P1K2 205 aa20.63■□□□□ 0.89
CLIP3-206ENST00000593074 TMEM110Q86TL2 294 aa20.63■□□□□ 0.89
CLIP3-206ENST00000593074 EXOC3L1Q86VI1 746 aa20.63■□□□□ 0.89
CLIP3-206ENST00000593074 STK32AQ8WU08 396 aa20.63■□□□□ 0.89
CLIP3-206ENST00000593074 SLC35F5Q8WV83 523 aa20.63■□□□□ 0.89
CLIP3-206ENST00000593074 HSPH1Q92598 858 aa20.63■□□□□ 0.89
CLIP3-206ENST00000593074 ZIC5Q96T25 663 aa20.63■□□□□ 0.89
CLIP3-206ENST00000593074 MTG1Q9BT17 334 aaPredicted RBP20.63■□□□□ 0.89
CLIP3-206ENST00000593074 RSAD1Q9HA92 442 aa20.63■□□□□ 0.89
CLIP3-206ENST00000593074 GGA2Q9UJY4 613 aa20.63■□□□□ 0.89
CLIP3-206ENST00000593074 FAM169AQ9Y6X4 670 aa20.63■□□□□ 0.89
CLIP3-206ENST00000593074 MYADML2A6NDP7 307 aa20.62■□□□□ 0.89
CLIP3-206ENST00000593074 C5orf60A6NFR6 353 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms