RNA–Protein interactions for RNA: ENST00000588667.5

ATG4D-208, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,619 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-208ENST00000588667 SLC4A11Q8NBS3 891 aa21.36■■□□□ 1.01
ATG4D-208ENST00000588667 TMEM176AQ96HP8 235 aa21.36■■□□□ 1.01
ATG4D-208ENST00000588667 RPGRIP1Q96KN7 1286 aa21.36■■□□□ 1.01
ATG4D-208ENST00000588667 CEP295NLQ96MC4 621 aa21.36■■□□□ 1.01
ATG4D-208ENST00000588667 MED10Q9BTT4 135 aa21.36■■□□□ 1.01
ATG4D-208ENST00000588667 NUCKS1Q9H1E3 243 aaKnown RBP21.36■■□□□ 1.01
ATG4D-208ENST00000588667 FAM49BQ9NUQ9 324 aa21.36■■□□□ 1.01
ATG4D-208ENST00000588667 ZNF638Q14966 1978 aaKnown RBP21.35■■□□□ 1.01
ATG4D-208ENST00000588667 TRIM66O15016 1216 aa21.35■■□□□ 1.01
ATG4D-208ENST00000588667 EPHB6O15197 1021 aa21.35■■□□□ 1.01
ATG4D-208ENST00000588667 CCDC130P13994 396 aa21.35■■□□□ 1.01
ATG4D-208ENST00000588667 ACO1P21399 889 aaKnown RBP21.35■■□□□ 1.01
ATG4D-208ENST00000588667 GRIK1P39086 918 aa21.35■■□□□ 1.01
ATG4D-208ENST00000588667 CYP4A22Q5TCH4 519 aa21.35■■□□□ 1.01
ATG4D-208ENST00000588667 PAQR9Q6ZVX9 377 aa21.35■■□□□ 1.01
ATG4D-208ENST00000588667 PDZD4Q76G19 769 aaPredicted RBP21.35■■□□□ 1.01
ATG4D-208ENST00000588667 GET4Q7L5D6 327 aaPredicted RBP21.35■■□□□ 1.01
ATG4D-208ENST00000588667 OTOP3Q7RTS5 596 aa21.35■■□□□ 1.01
ATG4D-208ENST00000588667 DNAJB7Q7Z6W7 309 aaPredicted RBP21.35■■□□□ 1.01
ATG4D-208ENST00000588667 TMTC1Q8IUR5 882 aa21.35■■□□□ 1.01
ATG4D-208ENST00000588667 TDRD5Q8NAT2 981 aaKnown RBP21.35■■□□□ 1.01
ATG4D-208ENST00000588667 SLC2A14Q8TDB8 520 aa21.35■■□□□ 1.01
ATG4D-208ENST00000588667 SMARCD1Q96GM5 515 aa21.35■■□□□ 1.01
ATG4D-208ENST00000588667 KREMEN1Q96MU8 473 aa21.35■■□□□ 1.01
ATG4D-208ENST00000588667 UHRF1Q96T88 793 aaPredicted RBP21.35■■□□□ 1.01
ATG4D-208ENST00000588667 BDP1A6H8Y1 2624 aa21.35■■□□□ 1.01
ATG4D-208ENST00000588667 DENND4CQ5VZ89 1909 aa21.34■■□□□ 1.01
ATG4D-208ENST00000588667 C19orf67A6NJJ6 358 aa21.34■■□□□ 1.01
ATG4D-208ENST00000588667 LOC730098B7Z3J9 87 aa21.34■■□□□ 1.01
ATG4D-208ENST00000588667 TMC8Q8IU68 726 aa21.34■■□□□ 1.01
ATG4D-208ENST00000588667 GPR152Q8TDT2 470 aa21.34■■□□□ 1.01
ATG4D-208ENST00000588667 GIPC2Q8TF65 315 aa21.34■■□□□ 1.01
ATG4D-208ENST00000588667 ACSF2Q96CM8 615 aaPredicted RBP21.34■■□□□ 1.01
ATG4D-208ENST00000588667 SPATA17Q96L03 361 aa21.34■■□□□ 1.01
ATG4D-208ENST00000588667 C8orf48Q96LL4 319 aa21.34■■□□□ 1.01
ATG4D-208ENST00000588667 HEXIM2Q96MH2 286 aaKnown RBP21.34■■□□□ 1.01
ATG4D-208ENST00000588667 HNRNPABQ99729 332 aaKnown RBP21.34■■□□□ 1.01
ATG4D-208ENST00000588667 LRRC3Q9BY71 257 aa21.34■■□□□ 1.01
ATG4D-208ENST00000588667 UBE2TQ9NPD8 197 aaPredicted RBP21.34■■□□□ 1.01
ATG4D-208ENST00000588667 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP21.34■■□□□ 1.01
ATG4D-208ENST00000588667 MRPS23Q9Y3D9 190 aaKnown RBP21.34■■□□□ 1.01
ATG4D-208ENST00000588667 DAAM1Q9Y4D1 1078 aa21.34■■□□□ 1.01
ATG4D-208ENST00000588667 PCDHB4Q9Y5E5 795 aa21.34■■□□□ 1.01
ATG4D-208ENST00000588667 PATJQ8NI35 1801 aa21.34■■□□□ 1.01
ATG4D-208ENST00000588667 CUL9Q8IWT3 2517 aa21.33■■□□□ 1.01
ATG4D-208ENST00000588667 ZNF197O14709 1029 aa21.33■■□□□ 1.01
ATG4D-208ENST00000588667 NOL4O94818 638 aa21.33■■□□□ 1.01
ATG4D-208ENST00000588667 CSH1P0DML2 217 aa21.33■■□□□ 1.01
ATG4D-208ENST00000588667 CSH2P0DML3 217 aa21.33■■□□□ 1.01
ATG4D-208ENST00000588667 SP100P23497 879 aaPredicted RBP21.33■■□□□ 1.01
ATG4D-208ENST00000588667 ANXA13P27216 316 aa21.33■■□□□ 1.01
ATG4D-208ENST00000588667 MFAP3P55082 362 aa21.33■■□□□ 1.01
ATG4D-208ENST00000588667 POLR2FP61218 127 aaKnown RBP21.33■■□□□ 1.01
ATG4D-208ENST00000588667 TAF12Q16514 161 aa21.33■■□□□ 1.01
ATG4D-208ENST00000588667 SLC5A9Q2M3M2 681 aa21.33■■□□□ 1.01
ATG4D-208ENST00000588667 PRSS36Q5K4E3 855 aa21.33■■□□□ 1.01
ATG4D-208ENST00000588667 KLHDC7AQ5VTJ3 777 aa21.33■■□□□ 1.01
ATG4D-208ENST00000588667 SDHAF4Q5VUM1 108 aa21.33■■□□□ 1.01
ATG4D-208ENST00000588667 TMEM270Q6UE05 265 aa21.33■■□□□ 1.01
ATG4D-208ENST00000588667 HS6ST3Q8IZP7 471 aa21.33■■□□□ 1.01
ATG4D-208ENST00000588667 CYFIP2Q96F07 1278 aa21.33■■□□□ 1.01
ATG4D-208ENST00000588667 NECAB3Q96P71 396 aaPredicted RBP21.33■■□□□ 1.01
ATG4D-208ENST00000588667 GANQ9H2C0 597 aa21.33■■□□□ 1.01
ATG4D-208ENST00000588667 SIX2Q9NPC8 291 aa21.33■■□□□ 1.01
ATG4D-208ENST00000588667 KRT82Q9NSB4 513 aa21.33■■□□□ 1.01
ATG4D-208ENST00000588667 TMEM30AQ9NV96 361 aa21.33■■□□□ 1.01
ATG4D-208ENST00000588667 MUC3AQ02505 3323 aa21.33■■□□□ 1.01
ATG4D-208ENST00000588667 OBSL1O75147 1896 aa21.33■■□□□ 1.01
ATG4D-208ENST00000588667 MYO10Q9HD67 2058 aa21.33■■□□□ 1
ATG4D-208ENST00000588667 C2CD4DB7Z1M9 353 aa21.33■■□□□ 1
ATG4D-208ENST00000588667 F8VP50 259 aa21.33■■□□□ 1
ATG4D-208ENST00000588667 FGF19O95750 216 aa21.33■■□□□ 1
ATG4D-208ENST00000588667 CACNA2D1P54289 1103 aa21.33■■□□□ 1
ATG4D-208ENST00000588667 APBA1Q02410 837 aa21.33■■□□□ 1
ATG4D-208ENST00000588667 GJB7Q6PEY0 223 aa21.33■■□□□ 1
ATG4D-208ENST00000588667 ITFG1Q8TB96 612 aa21.33■■□□□ 1
ATG4D-208ENST00000588667 ZNF334Q9HCZ1 680 aaPredicted RBP21.33■■□□□ 1
ATG4D-208ENST00000588667 DMAP1Q9NPF5 467 aaPredicted RBP21.33■■□□□ 1
ATG4D-208ENST00000588667 AP1G2O75843 785 aa21.32■■□□□ 1
ATG4D-208ENST00000588667 MICAL2O94851 1124 aa21.32■■□□□ 1
ATG4D-208ENST00000588667 PAEPP09466 180 aa21.32■■□□□ 1
ATG4D-208ENST00000588667 FAM200BP0CF97 657 aa21.32■■□□□ 1
ATG4D-208ENST00000588667 MYL4P12829 197 aa21.32■■□□□ 1
ATG4D-208ENST00000588667 UCHL3P15374 230 aa21.32■■□□□ 1
ATG4D-208ENST00000588667 HMGA1P17096 107 aaKnown RBP21.32■■□□□ 1
ATG4D-208ENST00000588667 HNRNPH3P31942 346 aaKnown RBP21.32■■□□□ 1
ATG4D-208ENST00000588667 GBP2P32456 591 aaPredicted RBP21.32■■□□□ 1
ATG4D-208ENST00000588667 CCR2P41597 374 aa21.32■■□□□ 1
ATG4D-208ENST00000588667 MEA1Q16626 185 aa21.32■■□□□ 1
ATG4D-208ENST00000588667 ARHGAP17Q68EM7 881 aa21.32■■□□□ 1
ATG4D-208ENST00000588667 SMYD5Q6GMV2 418 aa21.32■■□□□ 1
ATG4D-208ENST00000588667 GJD3Q8N144 294 aa21.32■■□□□ 1
ATG4D-208ENST00000588667 PLCD3Q8N3E9 789 aa21.32■■□□□ 1
ATG4D-208ENST00000588667 BAP1Q92560 729 aa21.32■■□□□ 1
ATG4D-208ENST00000588667 TRMT2BQ96GJ1 504 aaKnown RBP21.32■■□□□ 1
ATG4D-208ENST00000588667 MYADMQ96S97 322 aa21.32■■□□□ 1
ATG4D-208ENST00000588667 CDH7Q9ULB5 785 aa21.32■■□□□ 1
ATG4D-208ENST00000588667 CNTN6Q9UQ52 1028 aa21.32■■□□□ 1
ATG4D-208ENST00000588667 ZFP37Q9Y6Q3 630 aaPredicted RBP21.32■■□□□ 1
ATG4D-208ENST00000588667 SLC38A8A6NNN8 435 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms