RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 HDAC5Q9UQL6 1122 aa8.64□□□□□ -1.03
VMP1-208ENST00000588617 DERAQ9Y315 318 aa8.64□□□□□ -1.03
VMP1-208ENST00000588617 NR2E1Q9Y466 385 aa8.64□□□□□ -1.03
VMP1-208ENST00000588617 PNMA6EA0A0J9YXQ4 647 aa8.63□□□□□ -1.03
VMP1-208ENST00000588617 ZSCAN9O15535 394 aaPredicted RBP8.63□□□□□ -1.03
VMP1-208ENST00000588617 USO1O60763 962 aaKnown RBP8.63□□□□□ -1.03
VMP1-208ENST00000588617 TIPRLO75663 272 aa8.63□□□□□ -1.03
VMP1-208ENST00000588617 ITGB1P05556 798 aa8.63□□□□□ -1.03
VMP1-208ENST00000588617 ATXN1LP0C7T5 689 aaKnown RBP8.63□□□□□ -1.03
VMP1-208ENST00000588617 CHRM3P20309 590 aa8.63□□□□□ -1.03
VMP1-208ENST00000588617 ANKRD1Q15327 319 aa8.63□□□□□ -1.03
VMP1-208ENST00000588617 ATG16L1Q676U5 607 aa8.63□□□□□ -1.03
VMP1-208ENST00000588617 LAYNQ6UX15 382 aa8.63□□□□□ -1.03
VMP1-208ENST00000588617 TTC30AQ86WT1 665 aa8.63□□□□□ -1.03
VMP1-208ENST00000588617 SP8Q8IXZ3 490 aa8.63□□□□□ -1.03
VMP1-208ENST00000588617 KLHL36Q8N4N3 616 aa8.63□□□□□ -1.03
VMP1-208ENST00000588617 WDR60Q8WVS4 1066 aa8.63□□□□□ -1.03
VMP1-208ENST00000588617 PPP2R3CQ969Q6 453 aa8.63□□□□□ -1.03
VMP1-208ENST00000588617 SMOQ99835 787 aa8.63□□□□□ -1.03
VMP1-208ENST00000588617 TCF25Q9BQ70 676 aa8.63□□□□□ -1.03
VMP1-208ENST00000588617 REEP2Q9BRK0 252 aa8.63□□□□□ -1.03
VMP1-208ENST00000588617 G6PC2Q9NQR9 355 aa8.63□□□□□ -1.03
VMP1-208ENST00000588617 PI4KBQ9UBF8 816 aa8.63□□□□□ -1.03
VMP1-208ENST00000588617 GPR34Q9UPC5 381 aa8.63□□□□□ -1.03
VMP1-208ENST00000588617 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 FAM90A18PA6NE21 464 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 FAM90A16PA6NEW6 464 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 OR2W5A6NFC9 320 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 FAM90A9PA6NNJ1 464 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 FAM90A5PA8MXJ8 464 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 CNPP09543 421 aaKnown RBP8.62□□□□□ -1.03
VMP1-208ENST00000588617 FAM90A15PP0C7V4 464 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 FAM90A14PP0C7W9 464 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 ARP10275 920 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 LILRA4P59901 499 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 ZIK1Q3SY52 487 aaPredicted RBP8.62□□□□□ -1.03
VMP1-208ENST00000588617 WDR45BQ5MNZ6 344 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 TTC22Q5TAA0 569 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 FAM205BPQ63HN1 556 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 SLC30A10Q6XR72 485 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 SYT13Q7L8C5 426 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 TMEFF1Q8IYR6 380 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 CFAP52Q8N1V2 620 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 RNF169Q8NCN4 708 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 CPT1BQ92523 772 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 TIGD1Q96MW7 591 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 TLR10Q9BXR5 811 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 EPB41L4BQ9H329 900 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 RNPEPQ9H4A4 650 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 NSUN3Q9H649 340 aaKnown RBP8.62□□□□□ -1.03
VMP1-208ENST00000588617 ETAA1Q9NY74 926 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 TBX20Q9UMR3 447 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 CDYLQ9Y232 598 aa8.62□□□□□ -1.03
VMP1-208ENST00000588617 EFCAB8A8MWE9 144 aa8.61□□□□□ -1.03
VMP1-208ENST00000588617 SRGAP2O75044 1071 aa8.61□□□□□ -1.03
VMP1-208ENST00000588617 LRPAP1P30533 357 aa8.61□□□□□ -1.03
VMP1-208ENST00000588617 MAN2A2P49641 1150 aa8.61□□□□□ -1.03
VMP1-208ENST00000588617 RBM5P52756 815 aaKnown RBP eCLIP8.61□□□□□ -1.03
VMP1-208ENST00000588617 PIGFQ07326 219 aa8.61□□□□□ -1.03
VMP1-208ENST00000588617 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.61□□□□□ -1.03
VMP1-208ENST00000588617 NFYCQ13952 458 aa8.61□□□□□ -1.03
VMP1-208ENST00000588617 TSTQ16762 297 aaKnown RBP8.61□□□□□ -1.03
VMP1-208ENST00000588617 ZNF568Q3ZCX4 644 aa8.61□□□□□ -1.03
VMP1-208ENST00000588617 NOMO2Q5JPE7 1267 aa8.61□□□□□ -1.03
VMP1-208ENST00000588617 MCTP2Q6DN12 878 aa8.61□□□□□ -1.03
VMP1-208ENST00000588617 ABLIM2Q6H8Q1 611 aa8.61□□□□□ -1.03
VMP1-208ENST00000588617 EFCAB12Q6NXP0 572 aa8.61□□□□□ -1.03
VMP1-208ENST00000588617 MED25Q71SY5 747 aa8.61□□□□□ -1.03
VMP1-208ENST00000588617 RALYLQ86SE5 291 aaKnown RBP8.61□□□□□ -1.03
VMP1-208ENST00000588617 CHD1LQ86WJ1 897 aa8.61□□□□□ -1.03
VMP1-208ENST00000588617 PHACTR3Q96KR7 559 aa8.61□□□□□ -1.03
VMP1-208ENST00000588617 LSM14BQ9BX40 385 aaKnown RBP8.61□□□□□ -1.03
VMP1-208ENST00000588617 ABHD16BQ9H3Z7 469 aa8.61□□□□□ -1.03
VMP1-208ENST00000588617 KCNK12Q9HB15 430 aa8.61□□□□□ -1.03
VMP1-208ENST00000588617 SPON1Q9HCB6 807 aa8.61□□□□□ -1.03
VMP1-208ENST00000588617 KRT84Q9NSB2 600 aa8.61□□□□□ -1.03
VMP1-208ENST00000588617 KCND3Q9UK17 655 aa8.61□□□□□ -1.03
VMP1-208ENST00000588617 RAD54BQ9Y620 910 aa8.61□□□□□ -1.03
VMP1-208ENST00000588617 A0A1W2PRX2 142 aa8.6□□□□□ -1.03
VMP1-208ENST00000588617 PRR5-ARHGAP8B1AHC4 643 aa8.6□□□□□ -1.03
VMP1-208ENST00000588617 BIN1O00499 593 aa8.6□□□□□ -1.03
VMP1-208ENST00000588617 SERPINA4P29622 427 aa8.6□□□□□ -1.03
VMP1-208ENST00000588617 TOB1P50616 345 aaPredicted RBP8.6□□□□□ -1.03
VMP1-208ENST00000588617 PRKAG1P54619 331 aa8.6□□□□□ -1.03
VMP1-208ENST00000588617 DRG2P55039 364 aaKnown RBP8.6□□□□□ -1.03
VMP1-208ENST00000588617 RIN1Q13671 783 aa8.6□□□□□ -1.03
VMP1-208ENST00000588617 SMAD1Q15797 465 aaKnown RBP8.6□□□□□ -1.03
VMP1-208ENST00000588617 MEA1Q16626 185 aa8.6□□□□□ -1.03
VMP1-208ENST00000588617 RNF151Q2KHN1 245 aa8.6□□□□□ -1.03
VMP1-208ENST00000588617 TRIM60Q495X7 471 aa8.6□□□□□ -1.03
VMP1-208ENST00000588617 TSHZ3Q63HK5 1081 aa8.6□□□□□ -1.03
VMP1-208ENST00000588617 GALNT5Q7Z7M9 940 aa8.6□□□□□ -1.03
VMP1-208ENST00000588617 NSUN7Q8NE18 718 aaKnown RBP8.6□□□□□ -1.03
VMP1-208ENST00000588617 ADAMTS15Q8TE58 950 aa8.6□□□□□ -1.03
VMP1-208ENST00000588617 ABHD5Q8WTS1 349 aa8.6□□□□□ -1.03
VMP1-208ENST00000588617 BORCS6Q96GS4 357 aa8.6□□□□□ -1.03
VMP1-208ENST00000588617 TRIB1Q96RU8 372 aa8.6□□□□□ -1.03
VMP1-208ENST00000588617 ACAD9Q9H845 621 aa8.6□□□□□ -1.03
VMP1-208ENST00000588617 ANKEF1Q9NU02 776 aa8.6□□□□□ -1.03
VMP1-208ENST00000588617 NDUFAF4Q9P032 175 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms