RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, human

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFFL-208	ENST00000581039		H0Y626	953 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039		H3BQV1	296 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	SGK1	O00141	431 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	KAT7	O95251	611 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	TRIM16	O95361	564 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	APOD	P05090	189 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	CFI	P05156	583 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	HNRNPL	P14866	589 aa	Known RBP eCLIP	10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	PLCG1	P19174	1290 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	ANXA13	P27216	316 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	ADSS	P30520	456 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	TIE1	P35590	1138 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	DDIT3	P35638	169 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	GRIK1	P39086	918 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	RBP5	P82980	135 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	GFPT1	Q06210	699 aa	Predicted RBP	10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	DHCR24	Q15392	516 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	LYSMD4	Q5XG99	296 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	FAM171B	Q6P995	826 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	SLC23A3	Q6PIS1	610 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	FILIP1	Q7Z7B0	1213 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	OSTM1	Q86WC4	334 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	ADGRF2	Q8IZF7	708 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	LRRC52	Q8N7C0	313 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	FRMD1	Q8N878	549 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	KIAA1958	Q8N8K9	716 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	C1orf127	Q8N9H9	656 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	IL17RC	Q8NAC3	791 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	CEP76	Q8TAP6	659 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	HMGB4	Q8WW32	186 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	HVCN1	Q96D96	273 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	SPATA17	Q96L03	361 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	GTPBP2	Q9BX10	602 aa	Known RBP	10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	IKZF4	Q9H2S9	585 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	GDAP2	Q9NXN4	497 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	EHD2	Q9NZN4	543 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	PILRB	Q9UKJ0	227 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	KLK13	Q9UKR3	277 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	ITGA11	Q9UKX5	1188 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	SLC6A14	Q9UN76	642 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	NUP205	Q92621	2012 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	TSC2	P49815	1807 aa		10.63	□□□□□ -0.71
RFFL-208	ENST00000581039	ANK1	P16157	1881 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	SPEG	Q15772	3267 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039		A0A0A0MRY4	1105 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	UPK3BL1	B0FP48	263 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	UPK3BL2	E5RIL1	263 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	GABRD	O14764	452 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	HCRT	O43612	131 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	SEC24B	O95487	1268 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	LDHA	P00338	332 aa	Known RBP	10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	ABL1	P00519	1130 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	CYP17A1	P05093	508 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	ITPKA	P23677	461 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	HOXD12	P35452	270 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	LONP1	P36776	959 aa	Known RBP	10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	GRIA2	P42262	883 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	PPP3CC	P48454	512 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	SLC7A9	P82251	487 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	ZXDB	P98169	803 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	MYO1E	Q12965	1108 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	SEMA3B	Q13214	749 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	MAPRE1	Q15691	268 aa	Known RBP	10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	CCDC142	Q17RM4	750 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	DUOXA1	Q1HG43	343 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	SOWAHA	Q2M3V2	549 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	GAB4	Q2WGN9	574 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	MAP7D1	Q3KQU3	841 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	EMC10	Q5UCC4	262 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	VSTM1	Q6UX27	236 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	DENND5B	Q6ZUT9	1274 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	DPH6	Q7L8W6	267 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	DYM	Q7RTS9	669 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	PIP4P1	Q86T03	277 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	SFR1	Q86XK3	245 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	LARP4B	Q92615	738 aa	Known RBP	10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	SAAL1	Q96ER3	474 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	CEP295NL	Q96MC4	621 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	ACCS	Q96QU6	501 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	MRPL44	Q9H9J2	332 aa	Known RBP	10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	ARHGEF4	Q9NR80	690 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	RBAK	Q9NYW8	714 aa	Predicted RBP	10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	MBD1	Q9UIS9	605 aa	Predicted RBP	10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	CDH9	Q9ULB4	789 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	ASCC3	Q8N3C0	2202 aa	Known RBP	10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	DENND4C	Q5VZ89	1909 aa		10.62	□□□□□ -0.71
RFFL-208	ENST00000581039	ATXN2	Q99700	1313 aa	Known RBP	10.61	□□□□□ -0.71
RFFL-208	ENST00000581039	GON4L	Q3T8J9	2241 aa		10.61	□□□□□ -0.71
RFFL-208	ENST00000581039	TCRBV21S2A2	A0A5A6	115 aa		10.61	□□□□□ -0.71
RFFL-208	ENST00000581039	FAM221B	A6H8Z2	402 aa		10.61	□□□□□ -0.71
RFFL-208	ENST00000581039	ZNF840P	A6NDX5	716 aa		10.61	□□□□□ -0.71
RFFL-208	ENST00000581039	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	10.61	□□□□□ -0.71
RFFL-208	ENST00000581039	ZBTB24	O43167	697 aa	Predicted RBP	10.61	□□□□□ -0.71
RFFL-208	ENST00000581039	AP5Z1	O43299	807 aa		10.61	□□□□□ -0.71
RFFL-208	ENST00000581039	OPHN1	O60890	802 aa		10.61	□□□□□ -0.71
RFFL-208	ENST00000581039	ATP2C2	O75185	946 aa		10.61	□□□□□ -0.71
RFFL-208	ENST00000581039	ADH1C	P00326	375 aa		10.61	□□□□□ -0.71
RFFL-208	ENST00000581039	SERPINF2	P08697	491 aa		10.61	□□□□□ -0.71
RFFL-208	ENST00000581039	BDNF	P23560	247 aa		10.61	□□□□□ -0.71
RFFL-208	ENST00000581039	LMO2	P25791	158 aa		10.61	□□□□□ -0.71

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