RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 CSF2RAP15509 400 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 MMP8P22894 467 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 PNPLA4P41247 253 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 OR1G1P47890 313 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 RPL7AP62424 266 aaKnown RBP13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 GUCY1A3Q02108 690 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 TUSC3Q13454 348 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 TTC30AQ86WT1 665 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 IQCKQ8N0W5 287 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 TMEM35BQ8NCS4 154 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 NAP1L3Q99457 506 aaPredicted RBP13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 SH3GL2Q99962 352 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 TMEM106CQ9BVX2 250 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 FTHL17Q9BXU8 183 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 PCDHB7Q9Y5E2 793 aa13.37□□□□□ -0.27
CDK5RAP3-217ENST00000580287 GOLGA8SH3BPF8 625 aa13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 EOMESO95936 686 aa13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 CYP1A2P05177 515 aa13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 PFKMP08237 780 aa13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 CLTBP09497 229 aa13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 VDRP11473 427 aa13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 SKIP12755 728 aa13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 HPDP32754 393 aaPredicted RBP13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 GRIK3Q13003 919 aa13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 GOLGA7BQ2TAP0 167 aa13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 SEL1L2Q5TEA6 688 aa13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 CAPS2Q9BXY5 557 aa13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 MCOLN1Q9GZU1 580 aa13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 GTF3C4Q9UKN8 822 aa13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 PCDHGC3Q9UN70 934 aa13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 UTP11Q9Y3A2 253 aaKnown RBP13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 MIF4GDA9UHW6 222 aaKnown RBP13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 OPA1O60313 960 aa13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 TKTP29401 623 aaKnown RBP13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 GPD2P43304 727 aa13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 CNGA2Q16280 664 aa13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 TADA2BQ86TJ2 420 aa13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 ERICH1Q86X53 443 aa13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 SLC2A14Q8TDB8 520 aa13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 B3GALT6Q96L58 329 aa13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 SLITRK6Q9H5Y7 841 aa13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 TMEM161AQ9NX61 479 aa13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 DDX43Q9NXZ2 648 aaKnown RBP13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 ANAPC7Q9UJX3 599 aa13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 PLAAQ9Y263 795 aa13.36□□□□□ -0.27
CDK5RAP3-217ENST00000580287 SHOX2O60902 331 aaPredicted RBP13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 DR1Q01658 176 aa13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 MAMLD1Q13495 774 aa13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 CEP85LQ5SZL2 805 aa13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 LIMS2Q7Z4I7 341 aa13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 ABI1Q8IZP0 508 aa13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 BCAS4Q8TDM0 211 aa13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 FAXDC2Q96IV6 333 aa13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 PIWIL1Q96J94 861 aaKnown RBP13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 TMEM209Q96SK2 561 aa13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 SEZ6LQ9BYH1 1024 aa13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 UBN1Q9NPG3 1134 aa13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 MYBPHLA2RUH7 354 aa13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 ERBB2P04626 1255 aa13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 HADHBP55084 474 aaKnown RBP13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 CUL1Q13616 776 aa13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 UAP1Q16222 522 aaPredicted RBP13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 ALS2CLQ60I27 953 aa13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 PMF1Q6P1K2 205 aa13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 TRIM72Q6ZMU5 477 aa13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 NECAB2Q7Z6G3 386 aa13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 PHF13Q86YI8 300 aaPredicted RBP13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 CASD1Q96PB1 797 aa13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 TSPAN18Q96SJ8 248 aa13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 RHOBTB2Q9BYZ6 727 aa13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 FAM107BQ9H098 131 aa13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 LRFN2Q9ULH4 789 aa13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 RALGAPA2Q2PPJ7 1873 aa13.35□□□□□ -0.27
CDK5RAP3-217ENST00000580287 A0A087WUV0 522 aaPredicted RBP13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 MED7O43513 233 aa13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 GABBR2O75899 941 aa13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 BEST1O76090 585 aa13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 CXCL10P02778 98 aa13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 RPL9P32969 192 aaKnown RBP13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 UBAP2Q5T6F2 1119 aaKnown RBP13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 C1orf53Q5VUE5 145 aa13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 COLGALT2Q8IYK4 626 aa13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 B3GNT5Q9BYG0 378 aa13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 UVRAGQ9P2Y5 699 aa13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 TTC7AQ9ULT0 858 aaPredicted RBP13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 GRAP2O75791 330 aa13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 PYGMP11217 842 aa13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 HSD17B3P37058 310 aa13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 SEC24CP53992 1094 aa13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 TAF5Q15542 800 aa13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 MDH1BQ5I0G3 518 aa13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 LCLAT1Q6UWP7 414 aa13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 TMEM173Q86WV6 379 aaPredicted RBP13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 CRIPAKQ8N1N5 446 aa13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 EMC1Q8N766 993 aa13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 B3GALNT2Q8NCR0 500 aa13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 C18orf8Q96DM3 657 aa13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 RTP3Q9BQQ7 232 aa13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 SYNCQ9H7C4 482 aa13.34□□□□□ -0.27
CDK5RAP3-217ENST00000580287 NRDE2Q9H7Z3 1164 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms