RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 NLGN2Q8NFZ4 835 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 ZNF398Q8TD17 642 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 YIPF2Q9BWQ6 316 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 MAK16Q9BXY0 300 aaKnown RBP10□□□□□ -0.81
CCDC40-212ENST00000574799 PTTG2Q9NZH5 202 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 DOLKQ9UPQ8 538 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 IQANK1A0A1B0GTG1 560 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 NSFP46459 744 aaKnown RBP10□□□□□ -0.81
CCDC40-212ENST00000574799 ATXN3P54252 364 aaPredicted RBP10□□□□□ -0.81
CCDC40-212ENST00000574799 AQP4P55087 323 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 FASTKD3Q14CZ7 662 aaKnown RBP10□□□□□ -0.81
CCDC40-212ENST00000574799 LIN9Q5TKA1 542 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 MIER3Q7Z3K6 550 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 NET1Q7Z628 596 aaPredicted RBP10□□□□□ -0.81
CCDC40-212ENST00000574799 DAW1Q8N136 415 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 ATP11CQ8NB49 1132 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 GFM2Q969S9 779 aaKnown RBP10□□□□□ -0.81
CCDC40-212ENST00000574799 HSPBAP1Q96EW2 488 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 IFT43Q96FT9 208 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 TAGLN3Q9UI15 199 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 R3HDM2Q9Y2K5 976 aaKnown RBP10□□□□□ -0.81
CCDC40-212ENST00000574799 A0A0J9YVX5 310 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 GTPBP10A4D1E9 387 aaKnown RBP10□□□□□ -0.81
CCDC40-212ENST00000574799 GOLGA8IPA6NC78 632 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 GOLGA8JA6NMD2 632 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 SPDYE16A6NNV3 312 aaPredicted RBP10□□□□□ -0.81
CCDC40-212ENST00000574799 K7ENM7 598 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 BANF1O75531 89 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 PABPC4LP0CB38 370 aaKnown RBP10□□□□□ -0.81
CCDC40-212ENST00000574799 BASP1P80723 227 aaKnown RBP10□□□□□ -0.81
CCDC40-212ENST00000574799 NCOA4Q13772 614 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 C1QTNF12Q5T7M4 302 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 ARMCX6Q7L4S7 300 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 EFCAB3Q8N7B9 438 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 EIF2AK1Q9BQI3 630 aaKnown RBP10□□□□□ -0.81
CCDC40-212ENST00000574799 PIM2Q9P1W9 311 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 UVRAGQ9P2Y5 699 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 CIDEBQ9UHD4 219 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 PRPF4O43172 522 aaKnown RBP eCLIP9.99□□□□□ -0.81
CCDC40-212ENST00000574799 GAP43P17677 238 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 PEX2P28328 305 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 AQP5P55064 265 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 MFAP3P55082 362 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 SLC25A3Q00325 362 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 DLG1Q12959 904 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 TFDP1Q14186 410 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 PABPC1LQ4VXU2 614 aaKnown RBP9.99□□□□□ -0.81
CCDC40-212ENST00000574799 PLEKHG4Q58EX7 1191 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 TCHHL1Q5QJ38 904 aaPredicted RBP9.99□□□□□ -0.81
CCDC40-212ENST00000574799 SYCP2LQ5T4T6 812 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 ATG16L1Q676U5 607 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 OLFML1Q6UWY5 402 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 C1orf186Q6ZWK4 172 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 PATL1Q86TB9 770 aaKnown RBP9.99□□□□□ -0.81
CCDC40-212ENST00000574799 ZBTB8BQ8NAP8 495 aaPredicted RBP9.99□□□□□ -0.81
CCDC40-212ENST00000574799 RSAD2Q8WXG1 361 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 USP6NLQ92738 828 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 KAT5Q92993 513 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 MAML3Q96JK9 1138 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 PAFAH2Q99487 392 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 UNC45AQ9H3U1 944 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 RIPK3Q9Y572 518 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 GMEB1Q9Y692 573 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 RBM47A0AV96 593 aaKnown RBP9.99□□□□□ -0.81
CCDC40-212ENST00000574799 BOLA2-SMG1P6H3BVE0 249 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 PDLIM1O00151 329 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 TGFB1I1O43294 461 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 KRT1P04264 644 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 KRT10P13645 584 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 RAG1P15918 1043 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 KLHL38Q2WGJ6 581 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 KRT80Q6KB66 452 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 LDHDQ86WU2 507 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 NUDCD3Q8IVD9 361 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 SLC7A8Q9UHI5 535 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 ZNF112Q9UJU3 913 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 GTF3C4Q9UKN8 822 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 LTBP3Q9NS15 1303 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 ARHGEF35A5YM69 484 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 SIGLEC16A6NMB1 481 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 CFLARO15519 480 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 ZBTB48P10074 688 aaPredicted RBP9.99□□□□□ -0.81
CCDC40-212ENST00000574799 RARBP10826 455 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 ALAS1P13196 640 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 ITGA9Q13797 1035 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 NBPF12Q5TAG4 269 aaPredicted RBP9.99□□□□□ -0.81
CCDC40-212ENST00000574799 SLC47A2Q86VL8 602 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 PDIK1LQ8N165 341 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 ABHD8Q96I13 439 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 CCT7Q99832 543 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 POLR3CQ9BUI4 534 aaPredicted RBP9.99□□□□□ -0.81
CCDC40-212ENST00000574799 APOL6Q9BWW8 343 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 PKD2L1Q9P0L9 805 aa9.99□□□□□ -0.81
CCDC40-212ENST00000574799 TRIM43BA6NCK2 446 aa9.98□□□□□ -0.81
CCDC40-212ENST00000574799 CAPN8A6NHC0 703 aa9.98□□□□□ -0.81
CCDC40-212ENST00000574799 F8W8V4 182 aa9.98□□□□□ -0.81
CCDC40-212ENST00000574799 MAGEB2O15479 319 aa9.98□□□□□ -0.81
CCDC40-212ENST00000574799 ETS1P14921 441 aa9.98□□□□□ -0.81
CCDC40-212ENST00000574799 MUTP22033 750 aa9.98□□□□□ -0.81
CCDC40-212ENST00000574799 FUT4P22083 530 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms