RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.87■□□□□ 0.451e-7■□□□□ 10.9
VPS53-215ENST00000573028 ZFATQ9P243 1243 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 FAM237BA0A1B0GVD1 139 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 TCRBV9S1A1TA0A576 114 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 GRAP2O75791 330 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 MYL2P10916 166 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 SLC25A11Q02978 314 aaKnown RBP17.87■□□□□ 0.45
VPS53-215ENST00000573028 CPXM1Q96SM3 734 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 POLR2BP30876 1174 aaKnown RBP17.87■□□□□ 0.45
VPS53-215ENST00000573028 ARL2P36404 184 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 PRKG1Q13976 671 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 RCN2Q14257 317 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 CCDC142Q17RM4 750 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 CTC1Q2NKJ3 1217 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 SGSM1Q2NKQ1 1148 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 WASHC2DQ5SRD0 308 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 PPP1R15BQ5SWA1 713 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 SH3PXD2AQ5TCZ1 1133 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 CCDC62Q6P9F0 684 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 BBS12Q6ZW61 710 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 RTKN2Q8IZC4 609 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 FBXO41Q8TF61 875 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 TEPSINQ96N21 525 aa17.87■□□□□ 0.45
VPS53-215ENST00000573028 PDGFDQ9GZP0 370 aaPredicted RBP17.87■□□□□ 0.45
VPS53-215ENST00000573028 ZNF214Q9UL59 606 aaPredicted RBP17.87■□□□□ 0.45
VPS53-215ENST00000573028 KIAA1217Q5T5P2 1943 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 SPATA31C2B4DYI2 1134 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 MIPP30301 263 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 BACE1P56817 501 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 ZNF200P98182 395 aaPredicted RBP17.86■□□□□ 0.45
VPS53-215ENST00000573028 DPYSL3Q14195 570 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 RAB6CQ53S08 254 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 TTC13Q8NBP0 860 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 RNF149Q8NC42 400 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 FAF2Q96CS3 445 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 NSL1Q96IY1 281 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 BTBD10Q9BSF8 475 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 RAB6CQ9H0N0 254 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 DCLRE1BQ9H816 532 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 IQANK1A0A1B0GTG1 560 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 DPPA5A6NC42 116 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 TM9SF1O15321 606 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 ADCY3O60266 1144 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 RNF8O76064 485 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 IRX4P78413 519 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 ENPEPQ07075 957 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 RINLQ6ZS11 566 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 PRPF39Q86UA1 669 aaKnown RBP17.86■□□□□ 0.45
VPS53-215ENST00000573028 ALYREFQ86V81 257 aaKnown RBP17.86■□□□□ 0.45
VPS53-215ENST00000573028 ZNF276Q8N554 614 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 PDCD7Q8N8D1 485 aaKnown RBP17.86■□□□□ 0.45
VPS53-215ENST00000573028 PPP1R12CQ9BZL4 782 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 VPS11Q9H270 941 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 ZNF395Q9H8N7 513 aaPredicted RBP17.86■□□□□ 0.45
VPS53-215ENST00000573028 RAB6BQ9NRW1 208 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 KCNG1Q9UIX4 513 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 LRRC42Q9Y546 428 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 HEY1Q9Y5J3 304 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 ADGRA2Q96PE1 1338 aa17.86■□□□□ 0.45
VPS53-215ENST00000573028 CAPN9O14815 690 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 GJB1P08034 283 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 EIF4BP23588 611 aaKnown RBP17.85■□□□□ 0.45
VPS53-215ENST00000573028 CDH6P55285 790 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 TAP1Q03518 808 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 CIAPIN1Q6FI81 312 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 WDR49Q8IV35 697 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 CCDC33Q8N5R6 958 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 WRNIP1Q96S55 665 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 PPCSQ9HAB8 311 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 SAR1AQ9NR31 198 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 TRIM49D1C9J1S8 452 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 PLSCR1O15162 318 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 NVLO15381 856 aaKnown RBP17.85■□□□□ 0.45
VPS53-215ENST00000573028 GSC2O15499 205 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 CCNG1P51959 295 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 BMPR2Q13873 1038 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 ACSBG2Q5FVE4 666 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 SCYL2Q6P3W7 929 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 AGBL3Q8NEM8 1001 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.85■□□□□ 0.45
VPS53-215ENST00000573028 MZB1Q8WU39 189 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 STMN2Q93045 179 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 ZBTB10Q96DT7 871 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 ACAD9Q9H845 621 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 NMRK1Q9NWW6 199 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 STRIP2Q9ULQ0 834 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 CORO1CQ9ULV4 474 aaPredicted RBP17.85■□□□□ 0.45
VPS53-215ENST00000573028 COL4A5P29400 1685 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 COPEO14579 308 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 ABCD1P33897 745 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 TUBP50607 506 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 MAP3K10Q02779 954 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 SMAD1Q15797 465 aaKnown RBP17.85■□□□□ 0.45
VPS53-215ENST00000573028 STXBP2Q15833 593 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 TRIM50Q86XT4 487 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP17.85■□□□□ 0.452e-7■■■■■ 278.5
VPS53-215ENST00000573028 UBA3Q8TBC4 463 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 WDR60Q8WVS4 1066 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 PICK1Q9NRD5 415 aa17.85■□□□□ 0.45
VPS53-215ENST00000573028 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms