RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 AGTPBP1Q9UPW5 1226 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 B3GALT1Q9Y5Z6 326 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 TEX51A0A1B0GUA7 166 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 B4E171 279 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 H3BML4 177 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 TUSC2O75896 110 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 BAG2O95816 211 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 MYBP10242 640 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 SLC9A1P19634 815 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 ABCB4P21439 1286 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 XPAP23025 273 aaPredicted RBP6.75□□□□□ -1.33
VPS53-212ENST00000572259 HOXA7P31268 230 aaPredicted RBP6.75□□□□□ -1.33
VPS53-212ENST00000572259 SHMT1P34896 483 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 STAT5AP42229 794 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 PRMT2P55345 433 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 NKX3-2P78367 333 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 LLGL1Q15334 1064 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 HIBCHQ6NVY1 386 aaPredicted RBP6.75□□□□□ -1.33
VPS53-212ENST00000572259 FBXO46Q6PJ61 603 aaPredicted RBP6.75□□□□□ -1.33
VPS53-212ENST00000572259 RFX8Q6ZV50 586 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 CENPQQ7L2Z9 268 aaPredicted RBP6.75□□□□□ -1.33
VPS53-212ENST00000572259 MIB1Q86YT6 1006 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 EFHBQ8N7U6 833 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 PCYOX1LQ8NBM8 494 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 FBXO15Q8NCQ5 510 aaPredicted RBP6.75□□□□□ -1.33
VPS53-212ENST00000572259 TRAPPC12Q8WVT3 735 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 DLG3Q92796 817 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 SLC5A5Q92911 643 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 ARL8AQ96BM9 186 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 HVCN1Q96D96 273 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 MAP3K14Q99558 947 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 MCOLN1Q9GZU1 580 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 CXorf56Q9H5V9 222 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 DNAJC18Q9H819 358 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 KCNK12Q9HB15 430 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 TOMM22Q9NS69 142 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 H2AFY2Q9P0M6 372 aaPredicted RBP6.75□□□□□ -1.33
VPS53-212ENST00000572259 CDC23Q9UJX2 597 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 TRIM17Q9Y577 477 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 SPO11Q9Y5K1 396 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 SNX5Q9Y5X3 404 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.75□□□□□ -1.33
VPS53-212ENST00000572259 SIPA1L1O43166 1804 aa6.75□□□□□ -1.33
VPS53-212ENST00000572259 SYNDIG1LA6NDD5 238 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 TIPRLO75663 272 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 CYP17A1P05093 508 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 DHRS4L1P0CG22 281 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 PEX2P28328 305 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 PRIM2P49643 509 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 NCKAP1LP55160 1127 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 CACNB2Q08289 660 aaPredicted RBP6.74□□□□□ -1.33
VPS53-212ENST00000572259 RRP1BQ14684 758 aaKnown RBP6.74□□□□□ -1.33
VPS53-212ENST00000572259 ALX1Q15699 326 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 GPATCH4Q5T3I0 446 aaKnown RBP6.74□□□□□ -1.33
VPS53-212ENST00000572259 IZUMO3Q5VZ72 239 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 LMBRD2Q68DH5 695 aaPredicted RBP6.74□□□□□ -1.33
VPS53-212ENST00000572259 FSTL4Q6MZW2 842 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 TMCO3Q6UWJ1 677 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 C17orf99Q6UX52 265 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 NEK10Q6ZWH5 1172 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 RPAINQ86UA6 219 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 KIAA0319LQ8IZA0 1049 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 MIER2Q8N344 545 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 CD99L2Q8TCZ2 262 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 LPAR1Q92633 364 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 CENPIQ92674 756 aaPredicted RBP6.74□□□□□ -1.33
VPS53-212ENST00000572259 KCNN1Q92952 543 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 COA7Q96BR5 231 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 DYNLL2Q96FJ2 89 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 CCDC34Q96HJ3 373 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 ABHD8Q96I13 439 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 ZSCAN31Q96LW9 406 aaPredicted RBP6.74□□□□□ -1.33
VPS53-212ENST00000572259 ELF4Q99607 663 aaPredicted RBP6.74□□□□□ -1.33
VPS53-212ENST00000572259 BARD1Q99728 777 aaKnown RBP6.74□□□□□ -1.33
VPS53-212ENST00000572259 TREX2Q9BQ50 279 aaPredicted RBP6.74□□□□□ -1.33
VPS53-212ENST00000572259 KRTAP4-2Q9BYR5 136 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 GTPBP4Q9BZE4 634 aaKnown RBP6.74□□□□□ -1.33
VPS53-212ENST00000572259 KIAA1683Q9H0B3 1180 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 R3HDMLQ9H3Y0 253 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 CNTD2Q9H8S5 307 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 UBN1Q9NPG3 1134 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 DMRT3Q9NQL9 472 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 HOXC10Q9NYD6 342 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 CPA4Q9UI42 421 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 PADI4Q9UM07 663 aa6.74□□□□□ -1.33
VPS53-212ENST00000572259 MGAMO43451 1857 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 CYP2D7A0A087X1C5 515 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 MYOCOSA0A1B0GUC4 107 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 ACOT7O00154 380 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 EIF3FO00303 357 aaPredicted RBP6.73□□□□□ -1.33
VPS53-212ENST00000572259 DVL2O14641 736 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 FOXP2O15409 715 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 SEMA7AO75326 666 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 LRG1P02750 347 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 C4BPAP04003 597 aaKnown RBP6.73□□□□□ -1.33
VPS53-212ENST00000572259 CSTBP04080 98 aaKnown RBP6.73□□□□□ -1.33
VPS53-212ENST00000572259 CHGBP05060 677 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 TSPY3P0CV98 308 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 TSPY8P0CW00 308 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 CYP2C8P10632 490 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms