RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 POSTNQ15063 836 aa20.54■□□□□ 0.88
NUP88-203ENST00000572019 EMC10Q5UCC4 262 aa20.54■□□□□ 0.88
NUP88-203ENST00000572019 TTC30AQ86WT1 665 aa20.54■□□□□ 0.88
NUP88-203ENST00000572019 TMEM86AQ8N2M4 240 aa20.54■□□□□ 0.88
NUP88-203ENST00000572019 OR5B17Q8NGF7 314 aa20.54■□□□□ 0.88
NUP88-203ENST00000572019 NOC3LQ8WTT2 800 aaKnown RBP20.54■□□□□ 0.88
NUP88-203ENST00000572019 CNOT6LQ96LI5 555 aaKnown RBP20.54■□□□□ 0.88
NUP88-203ENST00000572019 TMEM30AQ9NV96 361 aa20.54■□□□□ 0.88
NUP88-203ENST00000572019 CLIC4Q9Y696 253 aa20.54■□□□□ 0.88
NUP88-203ENST00000572019 KHNYNO15037 678 aaKnown RBP20.53■□□□□ 0.88
NUP88-203ENST00000572019 GCNT3O95395 438 aa20.53■□□□□ 0.88
NUP88-203ENST00000572019 TCF3P15923 654 aa20.53■□□□□ 0.88
NUP88-203ENST00000572019 BDNFP23560 247 aa20.53■□□□□ 0.88
NUP88-203ENST00000572019 ABCD1P33897 745 aa20.53■□□□□ 0.88
NUP88-203ENST00000572019 DHPSP49366 369 aaPredicted RBP20.53■□□□□ 0.88
NUP88-203ENST00000572019 CACNA2D1P54289 1103 aa20.53■□□□□ 0.88
NUP88-203ENST00000572019 CRY1Q16526 586 aa20.53■□□□□ 0.88
NUP88-203ENST00000572019 USP39Q53GS9 565 aaKnown RBP20.53■□□□□ 0.88
NUP88-203ENST00000572019 ARMCX6Q7L4S7 300 aa20.53■□□□□ 0.88
NUP88-203ENST00000572019 CYP2U1Q7Z449 544 aa20.53■□□□□ 0.88
NUP88-203ENST00000572019 LIMS2Q7Z4I7 341 aa20.53■□□□□ 0.88
NUP88-203ENST00000572019 FILIP1Q7Z7B0 1213 aa20.53■□□□□ 0.88
NUP88-203ENST00000572019 TOP6BLQ8N6T0 577 aa20.53■□□□□ 0.88
NUP88-203ENST00000572019 GLIS3Q8NEA6 775 aa20.53■□□□□ 0.88
NUP88-203ENST00000572019 DEFB124Q8NES8 71 aa20.53■□□□□ 0.88
NUP88-203ENST00000572019 PIGKQ92643 395 aa20.53■□□□□ 0.88
NUP88-203ENST00000572019 CLIC6Q96NY7 704 aa20.53■□□□□ 0.88
NUP88-203ENST00000572019 FNBP1Q96RU3 617 aa20.53■□□□□ 0.88
NUP88-203ENST00000572019 SYT15Q9BQS2 421 aa20.53■□□□□ 0.88
NUP88-203ENST00000572019 TMEM9BQ9NQ34 198 aa20.53■□□□□ 0.88
NUP88-203ENST00000572019 TMEM74BQ9NUR3 256 aa20.53■□□□□ 0.88
NUP88-203ENST00000572019 SMPD4Q9NXE4 827 aa20.53■□□□□ 0.88
NUP88-203ENST00000572019 ITGA11Q9UKX5 1188 aa20.53■□□□□ 0.88
NUP88-203ENST00000572019 MMP17Q9ULZ9 603 aa20.53■□□□□ 0.88
NUP88-203ENST00000572019 ATRXP46100 2492 aa20.53■□□□□ 0.88
NUP88-203ENST00000572019 SGK1O00141 431 aa20.52■□□□□ 0.88
NUP88-203ENST00000572019 UAP1L1Q3KQV9 507 aa20.52■□□□□ 0.88
NUP88-203ENST00000572019 DAB2IPQ5VWQ8 1189 aa20.52■□□□□ 0.88
NUP88-203ENST00000572019 KIAA1211LQ6NV74 962 aa20.52■□□□□ 0.88
NUP88-203ENST00000572019 ALLCQ8N6M5 410 aa20.52■□□□□ 0.88
NUP88-203ENST00000572019 OLIG1Q8TAK6 271 aa20.52■□□□□ 0.88
NUP88-203ENST00000572019 GATA6Q92908 595 aa20.52■□□□□ 0.88
NUP88-203ENST00000572019 FUBP3Q96I24 572 aaKnown RBP eCLIP20.52■□□□□ 0.88
NUP88-203ENST00000572019 ACCSQ96QU6 501 aa20.52■□□□□ 0.88
NUP88-203ENST00000572019 ADAM33Q9BZ11 813 aa20.52■□□□□ 0.88
NUP88-203ENST00000572019 FSCN3Q9NQT6 498 aa20.52■□□□□ 0.88
NUP88-203ENST00000572019 MBD1Q9UIS9 605 aaPredicted RBP20.52■□□□□ 0.88
NUP88-203ENST00000572019 FBXO2Q9UK22 296 aaPredicted RBP20.52■□□□□ 0.88
NUP88-203ENST00000572019 PKD1L2Q7Z442 2459 aa20.52■□□□□ 0.88
NUP88-203ENST00000572019 ATXN2Q99700 1313 aaKnown RBP20.52■□□□□ 0.87
NUP88-203ENST00000572019 A0A087X0B3 334 aa20.51■□□□□ 0.87
NUP88-203ENST00000572019 PRPF6O94906 941 aaKnown RBP20.51■□□□□ 0.87
NUP88-203ENST00000572019 NFATC1O95644 943 aa20.51■□□□□ 0.87
NUP88-203ENST00000572019 PDGFRBP09619 1106 aa20.51■□□□□ 0.87
NUP88-203ENST00000572019 PTGER3P43115 390 aa20.51■□□□□ 0.87
NUP88-203ENST00000572019 MAGEA11P43364 429 aa20.51■□□□□ 0.87
NUP88-203ENST00000572019 LHX1P48742 406 aa20.51■□□□□ 0.87
NUP88-203ENST00000572019 RBP5P82980 135 aa20.51■□□□□ 0.87
NUP88-203ENST00000572019 RABEP1Q15276 862 aa20.51■□□□□ 0.87
NUP88-203ENST00000572019 KDF1Q8NAX2 398 aaPredicted RBP20.51■□□□□ 0.87
NUP88-203ENST00000572019 CACTINQ8WUQ7 758 aaKnown RBP20.51■□□□□ 0.87
NUP88-203ENST00000572019 SCNM1Q9BWG6 230 aa20.51■□□□□ 0.87
NUP88-203ENST00000572019 PCDH15Q96QU1 1955 aa20.5■□□□□ 0.87
NUP88-203ENST00000572019 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa20.5■□□□□ 0.87
NUP88-203ENST00000572019 ADAM23O75077 832 aa20.5■□□□□ 0.87
NUP88-203ENST00000572019 KLF8O95600 359 aaPredicted RBP20.5■□□□□ 0.87
NUP88-203ENST00000572019 GARTP22102 1010 aa20.5■□□□□ 0.87
NUP88-203ENST00000572019 PCSK1P29120 753 aa20.5■□□□□ 0.87
NUP88-203ENST00000572019 TIE1P35590 1138 aa20.5■□□□□ 0.87
NUP88-203ENST00000572019 NR1H3Q13133 447 aa20.5■□□□□ 0.87
NUP88-203ENST00000572019 DHCR24Q15392 516 aa20.5■□□□□ 0.87
NUP88-203ENST00000572019 LARP1BQ659C4 914 aaKnown RBP20.5■□□□□ 0.87
NUP88-203ENST00000572019 FAM173BQ6P4H8 233 aa20.5■□□□□ 0.87
NUP88-203ENST00000572019 TMEFF1Q8IYR6 380 aa20.5■□□□□ 0.87
NUP88-203ENST00000572019 ADGRG2Q8IZP9 1017 aa20.5■□□□□ 0.87
NUP88-203ENST00000572019 FSIP1Q8NA03 581 aa20.5■□□□□ 0.87
NUP88-203ENST00000572019 IL17RCQ8NAC3 791 aa20.5■□□□□ 0.87
NUP88-203ENST00000572019 TXNDC5Q8NBS9 432 aaKnown RBP20.5■□□□□ 0.87
NUP88-203ENST00000572019 HPS3Q969F9 1004 aa20.5■□□□□ 0.87
NUP88-203ENST00000572019 EXOC4Q96A65 974 aa20.5■□□□□ 0.87
NUP88-203ENST00000572019 PCED1BQ96HM7 432 aa20.5■□□□□ 0.87
NUP88-203ENST00000572019 INTS13Q9NVM9 706 aa20.5■□□□□ 0.87
NUP88-203ENST00000572019 MAGEC2Q9UBF1 373 aaPredicted RBP20.5■□□□□ 0.87
NUP88-203ENST00000572019 CPQQ9Y646 472 aa20.5■□□□□ 0.87
NUP88-203ENST00000572019 ZNF840PA6NDX5 716 aa20.49■□□□□ 0.87
NUP88-203ENST00000572019 OLFM2O95897 454 aa20.49■□□□□ 0.87
NUP88-203ENST00000572019 CEACAM1P13688 526 aa20.49■□□□□ 0.87
NUP88-203ENST00000572019 CSRP1P21291 193 aaKnown RBP20.49■□□□□ 0.87
NUP88-203ENST00000572019 GRIK1P39086 918 aa20.49■□□□□ 0.87
NUP88-203ENST00000572019 P2RY2P41231 377 aa20.49■□□□□ 0.87
NUP88-203ENST00000572019 CYP27A1Q02318 531 aa20.49■□□□□ 0.87
NUP88-203ENST00000572019 RHBDF2Q6PJF5 856 aa20.49■□□□□ 0.87
NUP88-203ENST00000572019 CBWD2Q8IUF1 395 aa20.49■□□□□ 0.87
NUP88-203ENST00000572019 SPATA18Q8TC71 538 aa20.49■□□□□ 0.87
NUP88-203ENST00000572019 HPDLQ96IR7 371 aa20.49■□□□□ 0.87
NUP88-203ENST00000572019 SPATA17Q96L03 361 aa20.49■□□□□ 0.87
NUP88-203ENST00000572019 MRPL45Q9BRJ2 306 aaKnown RBP20.49■□□□□ 0.87
NUP88-203ENST00000572019 TTLL2Q9BWV7 592 aa20.49■□□□□ 0.87
NUP88-203ENST00000572019 SEL1LQ9UBV2 794 aa20.49■□□□□ 0.87
NUP88-203ENST00000572019 STK17AQ9UEE5 414 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms