RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 SPATA31D3P0C874 917 aa21.84■■□□□ 1.09
VPS53-210ENST00000571456 UCHL3P15374 230 aa21.84■■□□□ 1.09
VPS53-210ENST00000571456 ACO1P21399 889 aaKnown RBP21.84■■□□□ 1.09
VPS53-210ENST00000571456 EPHB3P54753 998 aa21.84■■□□□ 1.09
VPS53-210ENST00000571456 UBASH3AP57075 661 aa21.84■■□□□ 1.09
VPS53-210ENST00000571456 VEPH1Q14D04 833 aa21.84■■□□□ 1.09
VPS53-210ENST00000571456 MDH1BQ5I0G3 518 aa21.84■■□□□ 1.09
VPS53-210ENST00000571456 SPATA31D4Q6ZUB0 917 aa21.84■■□□□ 1.09
VPS53-210ENST00000571456 GPR149Q86SP6 731 aa21.84■■□□□ 1.09
VPS53-210ENST00000571456 ACOT1Q86TX2 421 aa21.84■■□□□ 1.09
VPS53-210ENST00000571456 ATAD1Q8NBU5 361 aa21.84■■□□□ 1.09
VPS53-210ENST00000571456 SHC3Q92529 594 aa21.84■■□□□ 1.09
VPS53-210ENST00000571456 ELMO3Q96BJ8 720 aa21.84■■□□□ 1.09
VPS53-210ENST00000571456 SMARCD1Q96GM5 515 aa21.84■■□□□ 1.09
VPS53-210ENST00000571456 KREMEN1Q96MU8 473 aa21.84■■□□□ 1.09
VPS53-210ENST00000571456 HNRNPABQ99729 332 aaKnown RBP21.84■■□□□ 1.09
VPS53-210ENST00000571456 LSM14BQ9BX40 385 aaKnown RBP21.84■■□□□ 1.09
VPS53-210ENST00000571456 DPEP3Q9H4B8 488 aa21.84■■□□□ 1.09
VPS53-210ENST00000571456 DNAJC12Q9UKB3 198 aa21.84■■□□□ 1.09
VPS53-210ENST00000571456 SIK3Q9Y2K2 1263 aa21.84■■□□□ 1.09
VPS53-210ENST00000571456 YIPF1Q9Y548 306 aa21.84■■□□□ 1.09
VPS53-210ENST00000571456 NME7Q9Y5B8 376 aa21.84■■□□□ 1.09
VPS53-210ENST00000571456 PCDHB4Q9Y5E5 795 aa21.84■■□□□ 1.09
VPS53-210ENST00000571456 MYH10P35580 1976 aa21.84■■□□□ 1.09
VPS53-210ENST00000571456 CCDC195A0A1B0GUA6 201 aa21.83■■□□□ 1.09
VPS53-210ENST00000571456 ATP2C2O75185 946 aa21.83■■□□□ 1.09
VPS53-210ENST00000571456 SEC24AO95486 1093 aa21.83■■□□□ 1.09
VPS53-210ENST00000571456 VNN2O95498 520 aa21.83■■□□□ 1.09
VPS53-210ENST00000571456 VDRP11473 427 aa21.83■■□□□ 1.09
VPS53-210ENST00000571456 RAD23BP54727 409 aa21.83■■□□□ 1.09
VPS53-210ENST00000571456 BPIFB4P59827 614 aa21.83■■□□□ 1.09
VPS53-210ENST00000571456 CYP27A1Q02318 531 aa21.83■■□□□ 1.09
VPS53-210ENST00000571456 NR1I3Q14994 352 aa21.83■■□□□ 1.09
VPS53-210ENST00000571456 SYCP1Q15431 976 aa21.83■■□□□ 1.09
VPS53-210ENST00000571456 MGAT5BQ3V5L5 792 aa21.83■■□□□ 1.09
VPS53-210ENST00000571456 IQCEQ6IPM2 695 aa21.83■■□□□ 1.09
VPS53-210ENST00000571456 ZC3H14Q6PJT7 736 aaKnown RBP21.83■■□□□ 1.09
VPS53-210ENST00000571456 TMEM270Q6UE05 265 aa21.83■■□□□ 1.09
VPS53-210ENST00000571456 DCLK2Q8N568 766 aa21.83■■□□□ 1.09
VPS53-210ENST00000571456 SLC4A11Q8NBS3 891 aa21.83■■□□□ 1.09
VPS53-210ENST00000571456 NEK11Q8NG66 645 aa21.83■■□□□ 1.09
VPS53-210ENST00000571456 PCMTD1Q96MG8 357 aaPredicted RBP21.83■■□□□ 1.09
VPS53-210ENST00000571456 HEXIM2Q96MH2 286 aaKnown RBP21.83■■□□□ 1.09
VPS53-210ENST00000571456 TMLHEQ9NVH6 421 aa21.83■■□□□ 1.09
VPS53-210ENST00000571456 CEP72Q9P209 647 aa21.83■■□□□ 1.09
VPS53-210ENST00000571456 DUSP12Q9UNI6 340 aa21.83■■□□□ 1.09
VPS53-210ENST00000571456 ZNF132P52740 706 aa21.82■■□□□ 1.08
VPS53-210ENST00000571456 SLC8A3P57103 927 aa21.82■■□□□ 1.08
VPS53-210ENST00000571456 MEA1Q16626 185 aa21.82■■□□□ 1.08
VPS53-210ENST00000571456 ST3GAL2Q16842 350 aa21.82■■□□□ 1.08
VPS53-210ENST00000571456 SGO2Q562F6 1265 aa21.82■■□□□ 1.08
VPS53-210ENST00000571456 ARHGAP17Q68EM7 881 aa21.82■■□□□ 1.08
VPS53-210ENST00000571456 DPY19L2P1Q6NXN4 242 aa21.82■■□□□ 1.08
VPS53-210ENST00000571456 C12orf76Q8N812 135 aaPredicted RBP21.82■■□□□ 1.08
VPS53-210ENST00000571456 ACSF2Q96CM8 615 aaPredicted RBP21.82■■□□□ 1.08
VPS53-210ENST00000571456 CYFIP2Q96F07 1278 aa21.82■■□□□ 1.08
VPS53-210ENST00000571456 SPATA17Q96L03 361 aa21.82■■□□□ 1.08
VPS53-210ENST00000571456 C8orf48Q96LL4 319 aa21.82■■□□□ 1.08
VPS53-210ENST00000571456 ZNF512Q96ME7 567 aaPredicted RBP21.82■■□□□ 1.08
VPS53-210ENST00000571456 TWNKQ96RR1 684 aa21.82■■□□□ 1.08
VPS53-210ENST00000571456 SEPT5Q99719 369 aaPredicted RBP21.82■■□□□ 1.08
VPS53-210ENST00000571456 STK33Q9BYT3 514 aa21.82■■□□□ 1.08
VPS53-210ENST00000571456 AVENQ9NQS1 362 aaPredicted RBP21.82■■□□□ 1.08
VPS53-210ENST00000571456 HMGXB4Q9UGU5 601 aa21.82■■□□□ 1.08
VPS53-210ENST00000571456 STK25O00506 426 aa21.81■■□□□ 1.08
VPS53-210ENST00000571456 HCRTO43612 131 aa21.81■■□□□ 1.08
VPS53-210ENST00000571456 FGF19O95750 216 aa21.81■■□□□ 1.08
VPS53-210ENST00000571456 ANXA13P27216 316 aa21.81■■□□□ 1.08
VPS53-210ENST00000571456 RBBP8NLQ8NC74 664 aaPredicted RBP21.81■■□□□ 1.08
VPS53-210ENST00000571456 RNF214Q8ND24 703 aa21.81■■□□□ 1.08
VPS53-210ENST00000571456 SMG7Q92540 1137 aaKnown RBP21.81■■□□□ 1.08
VPS53-210ENST00000571456 NUP58Q9BVL2 599 aa21.81■■□□□ 1.08
VPS53-210ENST00000571456 NAA15Q9BXJ9 866 aaKnown RBP21.81■■□□□ 1.08
VPS53-210ENST00000571456 B3GNT5Q9BYG0 378 aa21.81■■□□□ 1.08
VPS53-210ENST00000571456 EDEM3Q9BZQ6 932 aa21.81■■□□□ 1.08
VPS53-210ENST00000571456 PIDD1Q9HB75 910 aa21.81■■□□□ 1.08
VPS53-210ENST00000571456 PNPLA8Q9NP80 782 aa21.81■■□□□ 1.08
VPS53-210ENST00000571456 MED7O43513 233 aa21.8■■□□□ 1.08
VPS53-210ENST00000571456 RFPL2O75678 378 aa21.8■■□□□ 1.08
VPS53-210ENST00000571456 CSH1P0DML2 217 aa21.8■■□□□ 1.08
VPS53-210ENST00000571456 CSH2P0DML3 217 aa21.8■■□□□ 1.08
VPS53-210ENST00000571456 KRT5P13647 590 aa21.8■■□□□ 1.08
VPS53-210ENST00000571456 PTPN2P17706 415 aa21.8■■□□□ 1.08
VPS53-210ENST00000571456 TWF1Q12792 350 aa21.8■■□□□ 1.08
VPS53-210ENST00000571456 ZNF394Q53GI3 561 aa21.8■■□□□ 1.08
VPS53-210ENST00000571456 FIGNQ5HY92 759 aa21.8■■□□□ 1.08
VPS53-210ENST00000571456 TMC5Q6UXY8 1006 aa21.8■■□□□ 1.08
VPS53-210ENST00000571456 FAM35AQ86V20 835 aa21.8■■□□□ 1.08
VPS53-210ENST00000571456 FUKQ8N0W3 1084 aa21.8■■□□□ 1.08
VPS53-210ENST00000571456 KAT5Q92993 513 aa21.8■■□□□ 1.08
VPS53-210ENST00000571456 ZNF707Q96C28 371 aaPredicted RBP21.8■■□□□ 1.08
VPS53-210ENST00000571456 MED10Q9BTT4 135 aa21.8■■□□□ 1.08
VPS53-210ENST00000571456 GANQ9H2C0 597 aa21.8■■□□□ 1.08
VPS53-210ENST00000571456 DMAP1Q9NPF5 467 aaPredicted RBP21.8■■□□□ 1.08
VPS53-210ENST00000571456 FAM207AQ9NSI2 230 aaPredicted RBP21.8■■□□□ 1.08
VPS53-210ENST00000571456 MYO6Q9UM54 1294 aa21.8■■□□□ 1.08
VPS53-210ENST00000571456 SLC27A5Q9Y2P5 690 aa21.8■■□□□ 1.08
VPS53-210ENST00000571456 C2orf16Q68DN1 1984 aa21.79■■□□□ 1.08
VPS53-210ENST00000571456 FAM200BP0CF97 657 aa21.79■■□□□ 1.08
VPS53-210ENST00000571456 SDHBP21912 280 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms