RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 PLCB3Q01970 1234 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 LMNB2Q03252 620 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 SMARCB1Q12824 385 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 PDCLQ13371 301 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 LONRF2Q1L5Z9 754 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 NOMO2Q5JPE7 1267 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 EFHC1Q5JVL4 640 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 TMCO3Q6UWJ1 677 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 SLC39A5Q6ZMH5 540 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 IFT20Q8IY31 132 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 RCOR2Q8IZ40 523 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 GSTCDQ8NEC7 633 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 EXD1Q8NHP7 514 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 TFAP2BQ92481 460 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 CD101Q93033 1021 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 WNT8BQ93098 351 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 HLA-CQ95604 372 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 ARMC5Q96C12 935 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 MCRS1Q96EZ8 462 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 SENP8Q96LD8 212 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 TMEM175Q9BSA9 504 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 COLEC11Q9BWP8 271 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 SDCBP2Q9H190 292 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 PRDM16Q9HAZ2 1276 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 ARFGAP3Q9NP61 516 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 RRN3Q9NYV6 651 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 STK39Q9UEW8 545 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 TSPAN16Q9UKR8 245 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 RAB21Q9UL25 225 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 LRFN2Q9ULH4 789 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 A0A0C4DFX4 3053 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 M0QZQ0 153 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 KRIT1O00522 736 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 ENPP3O14638 875 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 XPO1O14980 1071 aaKnown RBP8.39□□□□□ -1.07
VPS39-213ENST00000570062 SYN3O14994 580 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 NCK2O43639 380 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 SRGAP2O75044 1071 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 B3GAT3O94766 335 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 FBXO21O94952 628 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 CXCL10P02778 98 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 ALDH2P05091 517 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 PTPN1P18031 435 aaKnown RBP8.39□□□□□ -1.07
VPS39-213ENST00000570062 CHRNA3P32297 505 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 CXCR5P32302 372 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 PCK1P35558 622 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 GJA8P48165 433 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 RPL34P49207 117 aaKnown RBP8.39□□□□□ -1.07
VPS39-213ENST00000570062 SCNN1GP51170 649 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 GUCY2FP51841 1108 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 TSPY1Q01534 308 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 RNASELQ05823 741 aaKnown RBP8.39□□□□□ -1.07
VPS39-213ENST00000570062 GPS2Q13227 327 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 DHX34Q14147 1143 aaKnown RBP8.39□□□□□ -1.07
VPS39-213ENST00000570062 GOLGA7BQ2TAP0 167 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 C8orf74Q6P047 294 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 DENND1BQ6P3S1 775 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 SYDE1Q6ZW31 735 aaPredicted RBP8.39□□□□□ -1.07
VPS39-213ENST00000570062 ACOT1Q86TX2 421 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 PASD1Q8IV76 773 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 MAP7D3Q8IWC1 876 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 KATNAL2Q8IYT4 538 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 WDTC1Q8N5D0 677 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 RNF169Q8NCN4 708 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 B3GALNT2Q8NCR0 500 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 COG1Q8WTW3 980 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 PPP1R13LQ8WUF5 828 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 SLC35F5Q8WV83 523 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 KCTD13Q8WZ19 329 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 HPS1Q92902 700 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 RNPC3Q96LT9 517 aaKnown RBP8.39□□□□□ -1.07
VPS39-213ENST00000570062 ZFP42Q96MM3 310 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 MRPL45Q9BRJ2 306 aaKnown RBP8.39□□□□□ -1.07
VPS39-213ENST00000570062 CNPY3Q9BT09 278 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 FAM129AQ9BZQ8 928 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 ACBD3Q9H3P7 528 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 PNPLA8Q9NP80 782 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 DDX43Q9NXZ2 648 aaKnown RBP8.39□□□□□ -1.07
VPS39-213ENST00000570062 RASAL2Q9UJF2 1139 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 TMEM59LQ9UK28 342 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 L1RE1Q9UN81 338 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 DOCK3Q8IZD9 2030 aa8.39□□□□□ -1.07
VPS39-213ENST00000570062 SZT2Q5T011 3432 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 TCRBV5S1A1TA0A578 114 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 ZNF185O15231 689 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 MGEA5O60502 916 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 TJP3O95049 919 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 FGGP02679 453 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 FAM200BP0CF97 657 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 SNRPBP14678 240 aaKnown RBP8.38□□□□□ -1.07
VPS39-213ENST00000570062 H2AFXP16104 143 aaPredicted RBP8.38□□□□□ -1.07
VPS39-213ENST00000570062 TNFRSF8P28908 595 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 RDXP35241 583 aaKnown RBP8.38□□□□□ -1.07
VPS39-213ENST00000570062 PLA2G4AP47712 749 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 FNTAP49354 379 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 CLCNKBP51801 687 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 ZNF143P52747 638 aaPredicted RBP8.38□□□□□ -1.07
VPS39-213ENST00000570062 SLC6A3Q01959 620 aa8.38□□□□□ -1.07
VPS39-213ENST00000570062 SOX4Q06945 474 aaPredicted RBP8.38□□□□□ -1.07
VPS39-213ENST00000570062 IKBKEQ14164 716 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms